View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_65 (Length: 239)
Name: NF21197_low_65
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_65 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 17180774 - 17180553
Alignment:
| Q |
18 |
ttccaaacttcttcaaggccagaaattcaatgccaaaagattgatcaaatggtcaaagaagaaagtttaagcaacatgttttgtggtatggatgatcaag |
117 |
Q |
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| T |
17180774 |
ttccaaacttcttcaaggccagaaattcaatgccaaaagattgatcaaatggtcaaagaagaaagtttaagcaacatgttttgtggtatggatgatcaag |
17180675 |
T |
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| Q |
118 |
ctggattttggccatggttggagcaacaacatttcaattgaatcaaaaggagagttaattaattaatttaaattaaaatttgaatgttgnnnnnnngttt |
217 |
Q |
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| T |
17180674 |
ctggattttggccatggttggagcaacaacatttcaattgaatcaaaaggagagttaattaattaatttaaattaaaatttgaatgttgtttttttgttt |
17180575 |
T |
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| Q |
218 |
aatgtgaaatcaaaagggtgtt |
239 |
Q |
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| T |
17180574 |
aatgtgaaatcaaaagggtgtt |
17180553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 24691230 - 24691103
Alignment:
| Q |
29 |
ttcaaggccagaaattcaatgccaaaagattgatcaaatggtcaaagaagaaagtttaagcaacatgttttgtggtatggatgatcaagctggattttgg |
128 |
Q |
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| T |
24691230 |
ttcaagacaagacattcagtgtcaaaagattgatcacatggttaaagaagaaagcttgagtaacatgttttgtgccatggatgatcaatctggactatgg |
24691131 |
T |
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| Q |
129 |
ccatggttggagcaacaacatttcaatt |
156 |
Q |
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| T |
24691130 |
ccatggttggagcaacaacacttcaatt |
24691103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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