View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21197_low_67 (Length: 238)
Name: NF21197_low_67
Description: NF21197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21197_low_67 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 21111098 - 21111319
Alignment:
| Q |
17 |
aactttcgccaaaatttccatcttacttgaatcacaattagttccaatattaggatccaaaatttcttccacccaacatctactcctctttttctctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21111098 |
aactttcgccaaaatttccatcttacttgaatcacaattagttccaattttaggatccataatttcttccacccaacatctactcctctttttctctctt |
21111197 |
T |
|
| Q |
117 |
acccaagttatcaaccttccattgtatgcaacttctccatcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaa |
216 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
21111198 |
acccaatttatcaaccttccattgtatgccacttctccatcaactccttccatattcatcattgttggactctttccggttatcatatccaacaaaacaa |
21111297 |
T |
|
| Q |
217 |
ccccataactataaacatccac |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
21111298 |
ccccataactataaacatccac |
21111319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 18658220 - 18658441
Alignment:
| Q |
17 |
aactttcgccaaaatttccatcttacttgaatcacaattagttccaatattaggatccaaaatttcttccacccaacatctactcctctttttctctctt |
116 |
Q |
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|||||| ||||||| |||||||||| || |||||||||| || || || |||||||| ||||||||| ||||||||| |||||||||||||||||||| |
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| T |
18658220 |
aactttagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataatttcttcaacccaacatgtactcctctttttctctctt |
18658319 |
T |
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| Q |
117 |
acccaagttatcaaccttccattgtatgcaacttctccatcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaa |
216 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
18658320 |
acccaagttatcaaccttccattgtatgccatttctccatcaacgtcttctatattcatcatcgttggactctttccagttatcatctccaacaatacaa |
18658419 |
T |
|
| Q |
217 |
ccccataactataaacatccac |
238 |
Q |
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||||||||| |||||||||||| |
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| T |
18658420 |
ccccataaccataaacatccac |
18658441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 238
Target Start/End: Original strand, 21130066 - 21130279
Alignment:
| Q |
25 |
ccaaaatttccatcttacttgaatcacaattagttccaatattaggatccaaaatttcttccacccaacatctactcctctttttctctcttacccaagt |
124 |
Q |
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|||||||||||||||||||| ||||| ||||| | || || ||||||||| |||| ||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
21130066 |
ccaaaatttccatcttacttaaatcataattattccctattgcaggatccaagatttgttcaacccaacatgtactcctctttttctctcttacccaagt |
21130165 |
T |
|
| Q |
125 |
tatcaaccttccattgtatgcaacttctccatcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaaccccataa |
224 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
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| T |
21130166 |
tatcaaccttccattatatgtcccttctccatcaactccttctatattcatcattgttggactctttccggttatcatctctaacacgacaaccccgtaa |
21130265 |
T |
|
| Q |
225 |
ctataaacatccac |
238 |
Q |
| |
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|||||||||||||| |
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| T |
21130266 |
ctataaacatccac |
21130279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 39132678 - 39132457
Alignment:
| Q |
17 |
aactttcgccaaaatttccatcttacttgaatcacaattagttccaatattaggatccaaaatttcttccacccaacatctactcctctttttctctctt |
116 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||||||| | | || |||||||| ||||||||||||||||||| |||||| |||||||||||| |
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| T |
39132678 |
aactttagccaaaatttccatcttaattaaatcacaattaatcactattgaaggatccataatttcttccacccaacatgcactcctttttttctctctt |
39132579 |
T |
|
| Q |
117 |
acccaagttatcaaccttccattgtatgcaacttctccatcaactccttctatattcatcattgttggactctttccggttatcatctccaacaatacaa |
216 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||| |||| |
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| T |
39132578 |
acccaagttaccaaccttccattatatgccacttctccatcaactccttcaatattcatcattgttgatctttttccagttatcatctccaacaaaacaa |
39132479 |
T |
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| Q |
217 |
ccccataactataaacatccac |
238 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
39132478 |
tcccataactataaacatccac |
39132457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 4329394 - 4329499
Alignment:
| Q |
17 |
aactttcgccaaaatttccatcttacttgaatcacaattagttccaatattaggatccaaaatttcttccacccaacatctactcctctttttctctctt |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4329394 |
aactttggccaaaatttccatcttacttgaatcacaattagttccaatattaggatccataatttcttccacccaacatctactcctctttttctctctt |
4329493 |
T |
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| Q |
117 |
acccaa |
122 |
Q |
| |
|
|||||| |
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| T |
4329494 |
acccaa |
4329499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 26713623 - 26713683
Alignment:
| Q |
178 |
ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccac |
238 |
Q |
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||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
26713623 |
ttgttggactctttccggtaatcatctccaacaccacaactccatagctataaacatccac |
26713683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 26736859 - 26736919
Alignment:
| Q |
178 |
ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccac |
238 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
26736859 |
ttgttggactctttcctgtaatcatctccaacaccacaactccatagctataaacatccac |
26736919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 26743870 - 26743930
Alignment:
| Q |
178 |
ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccac |
238 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || || ||||| |||||||||||||| |
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|
| T |
26743870 |
ttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacatccac |
26743930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 26675261 - 26675316
Alignment:
| Q |
180 |
gttggactctttccggttatcatctccaacaatacaaccccataactataaacatc |
235 |
Q |
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||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |
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| T |
26675261 |
gttggactctttccggtaatcatctccaacaccacaattccataactataaacatc |
26675316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 26750795 - 26750855
Alignment:
| Q |
178 |
ttgttggactctttccggttatcatctccaacaatacaaccccataactataaacatccac |
238 |
Q |
| |
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||||||||||||||||||| ||||||||||||| || || ||||| |||||||| ||||| |
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| T |
26750795 |
ttgttggactctttccggtaatcatctccaacacaacgactccatagctataaacgtccac |
26750855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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