View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21198_high_3 (Length: 374)
Name: NF21198_high_3
Description: NF21198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21198_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 135 - 365
Target Start/End: Complemental strand, 1193349 - 1193123
Alignment:
| Q |
135 |
agcaactcgctcttttagtgtaaagtattttaagtaagtgattagcaaattttgacaaaacatgctagtacgtagtaaataagttagtataaaatagatg |
234 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
1193349 |
agcaactcgctcttatagtgttaagtattttaagtaagtgattaccaaattttgacaaaacatgctagta----gtaaataagttagtctaaaatagatg |
1193254 |
T |
|
| Q |
235 |
aattaactagtaatagaaagcttaattagttgattaactcttagtaacgtaaaatgaatattccttcctttctcttcattttccaaacaaaacagatcat |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1193253 |
aattaactagtaatagaaagcttaattagttgattaactcttagtaacgtaaaatgaatattccttcctttctcttcattttccaaacaaaacagaccat |
1193154 |
T |
|
| Q |
335 |
aattattctaaaaataaccggagagaattat |
365 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
1193153 |
aaatattctaaaaataaccggagagaattat |
1193123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University