View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21198_high_5 (Length: 230)

Name: NF21198_high_5

Description: NF21198

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21198_high_5

[»] chr3 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 133; E-Value: 3e-69

Query Start/End: Original strand, 83 - 219

Target Start/End: Original strand, 51115435 - 51115571

Alignment:

Q	83	gaatcaacagaaagaaagagtatataatgaacaagtcaaggaaggaagaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc	182	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51115435	gaatcaacagaaagaaagagtatataacgaacaagtcaaggaaggaagaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc	51115534	T

Q	183	ccctcccctttactgtctttgcatgtgtgtattttct	219	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	51115535	ccctcccctttactgtctttgcatgtgtgtattttct	51115571	T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 129 - 182

Target Start/End: Complemental strand, 640136 - 640083

Alignment:

Q	129	agaaaattctgccttcctcaatcctctctagaaatccataacctaagtaagtcc	182	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|
T	640136	agaaaattctgtcttcctcaatcccctcgagaaatctataaccaaaggaagtcc	640083	T

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