View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21198_low_3 (Length: 487)
Name: NF21198_low_3
Description: NF21198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21198_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 32844782 - 32844313
Alignment:
| Q |
1 |
gtcggcatttttggttacatataatcattaatattttcttaaactgttatcggtatataagtctcggtgttagtgtcgtgtatctgttgtccatttatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844782 |
gtcggcatttttggttacatataatcattaatattttcttaaactgttatcggtatataagtctcggtgttagtgtcgtgtatctgttgtccatttatgt |
32844683 |
T |
|
| Q |
101 |
gccggtgtttcttatactatttatagcagccgggtgtttttgtacaaagtcatgattaaaatttgaaagtaaaacagaaattgacatgtatgtttatggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32844682 |
gccggtgtttcttatactatttatagcagccgggtgtttttgtacaaagtcatgattaaaatttgaaagtaaaacagatattgacatgtatgtttatggt |
32844583 |
T |
|
| Q |
201 |
atgctatatatgtgcttcttttgatcatggttcagcattcctagctatcaatttgtatgaaattaatagtaacaatgttagattatgatcaatctggtgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844582 |
atgctatatatgtgcttcttttgatcatggttcagcattcctagctatcaatttgtatgaaattaatagtaacaatgttagattatgatcaatctggtgg |
32844483 |
T |
|
| Q |
301 |
attgttaattgtttgaaagtggttctgtttctggttttcagctgaggtcctctttcatggattttaaaagcaacaaaaggaactcgtgtaattctgagat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844482 |
attgttaattgtttgaaagtggttctgtttctggttttcagctgaggtcctctttcatggattttaaaagcaacaaaaggaactcgtgtaattctgagat |
32844383 |
T |
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| Q |
401 |
agctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaatgtatgtagaaatgtcgaatct |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844382 |
agctgatgctgaagcgaggaggttgagactcttggctgagaaggaaaatgtatgtagaaatgtcgaatct |
32844313 |
T |
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