View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21198_low_5 (Length: 286)
Name: NF21198_low_5
Description: NF21198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21198_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 3569829 - 3570076
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3569829 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
3569928 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3569929 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
3570028 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3570029 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgc |
3570076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 3564181 - 3564425
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||||||||||||||| || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3564181 |
attgctggtggacctctcggtgaggtggttgacccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
3564280 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||| |
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| T |
3564281 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggatttttcgttcaagccattgtgactggaaagggacctatcgagaacct |
3564380 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggccta |
264 |
Q |
| |
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||| |||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
3564381 |
cgccgaccaccttgctgacccggttaacaacaatgcttgggccta |
3564425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 3572876 - 3573123
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || |||||||| || ||||| || || || || |||||||||||||||| |
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|
| T |
3572876 |
attgcaggtggacctctcggtgaggttgtcgacccactctacccaggtggtagttttgacccattaggcctagctgatgacccagaggcttttgcagagt |
3572975 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
| |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || |
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|
| T |
3572976 |
taaaggtgaaagaactcaaaaatggaaggttagctatgttttccatgtttggattctttgttcaagctattgtaaccggaaaaggacctatagagaatct |
3573075 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgc |
267 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
3573076 |
tgctgaccaccttgctgacccagttaacaacaatgcatgggcctatgc |
3573123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 3576160 - 3576403
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||||| || || || || |||||||||||||||| |
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|
| T |
3576160 |
attgccggtggacctcttggtgaggtagtcgacccactctacccaggtggaagctttgacccattgggcctcgctgacgacccagaggcttttgcagagt |
3576259 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
| |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |
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|
| T |
3576260 |
taaaggtgaaagaacttaagaatggtaggctagctatgttctctatgtttggattcttcgttcaggccattgtaaccggaaagggacctctagagaacct |
3576359 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcct |
263 |
Q |
| |
|
|| ||||| | |||| || || |||||||| |||||||||| |
|
|
| T |
3576360 |
tgccgaccatatcactgaccccgtcaacaacaacgcttgggcct |
3576403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 3585058 - 3584815
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| || || ||||||||||||||||||| |
|
|
| T |
3585058 |
attgccggtggacctcttggtgaggtagtcgacccactctatccaggtggaagctttgacccattgggccttgctgaggaccccgaggcttttgcagagt |
3584959 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
| ||||| |||||||| || |||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||| | | ||||| |
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|
| T |
3584958 |
taaaggttaaagaactcaagaatggtaggttagcgatgttctctatgtttggattctttgttcaagccatcgtgaccggaaagggacctttaaaaaacct |
3584859 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcct |
263 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
3584858 |
tgctgaccacatcgctgacccagttaacaacaacgcttgggcct |
3584815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 28 - 263
Target Start/End: Original strand, 3578024 - 3578259
Alignment:
| Q |
28 |
tggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagttgaaggtg |
127 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||| || || || || ||||||||||||||||| ||||| |
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|
| T |
3578024 |
tggacctcttggtgaggtagtcgatccactctaccccggtggaagctttgacccattgggcctcgcagacgacccagaggcttttgcagagttaaaggtt |
3578123 |
T |
|
| Q |
128 |
aaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacctcgctgacc |
227 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||| | |||||||| ||||||| |
|
|
| T |
3578124 |
aaagaactcaagaatggcaggttagctatgttctcgatgtttggatttttcgttcaggccattgtaaccgaaaagggaccactagagaaccttgctgacc |
3578223 |
T |
|
| Q |
228 |
accttgctgatccagttaacaacaatgcttgggcct |
263 |
Q |
| |
|
|| | ||||||||||| |||| ||| |||||||||| |
|
|
| T |
3578224 |
acatcgctgatccagtcaacagcaacgcttgggcct |
3578259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 13276107 - 13276355
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||||||||||||||| || ||||| | || ||||||||||||||||| ||||| ||||| ||||| || ||||| || || || ||||||| ||||| |
|
|
| T |
13276107 |
attgctggtggacctcttggtgaggtgattgacccactctacccaggtggtagcttcgacccattgggtctcgccgatgacccagaagcttttgtagagt |
13276206 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
|||| |||||||| | || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||| | || ||||| |
|
|
| T |
13276207 |
tgaaagtgaaagagattaagaatggtaggttagccatgttttctatgtttggattcttcgttcaagccattgtgaccggaaagggacctttggaaaacct |
13276306 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgct |
268 |
Q |
| |
|
||||||||||| || || || || |||||||| |||||||||| |||| |
|
|
| T |
13276307 |
tgctgaccacctcgcagacccggtcaacaacaacgcttgggcctttgct |
13276355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 38357196 - 38357443
Alignment:
| Q |
20 |
attgctggtggacctctaggcgaggtagtcgatccactctacccaggtggcagctttgaccccttgggccttgccgaagatcccgaggcttttgcagagt |
119 |
Q |
| |
|
||||||||||| ||||| || ||||| || || ||||| |||||||| |||||||||||||| |||||||| || || || || |||||||| ||||||| |
|
|
| T |
38357196 |
attgctggtggtcctcttggtgaggttgttgacccactatacccaggaggcagctttgacccattgggcctagctgacgacccagaggctttcgcagagt |
38357295 |
T |
|
| Q |
120 |
tgaaggtgaaagaactaaaaaatggtaggttagctatgttctctatgtttggattcttcgttcaggccattgtcaccggaaagggacctattgagaacct |
219 |
Q |
| |
|
||||||| || ||||| || || ||||| ||||| |||||||||||||| |||||||| |||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
38357296 |
tgaaggttaaggaactcaagaacggtagattagccatgttctctatgttcggattctttgttcaggctattgtgaccggaaagggacctttggagaacct |
38357395 |
T |
|
| Q |
220 |
cgctgaccaccttgctgatccagttaacaacaatgcttgggcctatgc |
267 |
Q |
| |
|
|| || || ||||| || ||||| |||||||| || ||||||||||| |
|
|
| T |
38357396 |
tgccgatcatcttgccgacccagtcaacaacaacgcatgggcctatgc |
38357443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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