View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21199_high_3 (Length: 226)
Name: NF21199_high_3
Description: NF21199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21199_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10760598 - 10760817
Alignment:
| Q |
1 |
ctaaaggtaatattagaaatccgtatatatagctatctaattactgtttagtcaaaaaccaaagttatcaagctctaacaaactaactgattataaattg |
100 |
Q |
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| T |
10760598 |
ctaaaggtaatattagaaatccgtatatatagctatctaattactgtttagtcaaaaaccaaagttatcaagctctaacaaactaactgattataaattg |
10760697 |
T |
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| Q |
101 |
aaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacactcaattgtggttgttttaataactcagccattattataggaaatattaa |
200 |
Q |
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| T |
10760698 |
aaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacactcaattgtggttgttttaataactcagccattattacaggaaatattaa |
10760797 |
T |
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| Q |
201 |
tcctaaacagtgaaactaag |
220 |
Q |
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| T |
10760798 |
tcctaaacagtgaaactaag |
10760817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 10613762 - 10613682
Alignment:
| Q |
12 |
attagaaatccgtatatatagctatctaattactgtttagtcaaaaaccaaagttatcaagctctaacaaactaactgattata |
95 |
Q |
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| T |
10613762 |
attagaaatcagtatatatagctatctaattattgtttaatcaaaaaccaaagttaaaa---tctaacaaactaattgattata |
10613682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 10607334 - 10607253
Alignment:
| Q |
70 |
aagctctaacaaactaactgattataaattgaaaattaacaaggtcaacagactaactgaacttaagctgtaatatgcacac |
151 |
Q |
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| T |
10607334 |
aagctctaacaaactaattgatcacaaacagaaagttaactaagttaactgaataactgaaattaagctgtaatatgcacac |
10607253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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