View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21199_low_1 (Length: 436)
Name: NF21199_low_1
Description: NF21199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21199_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 4389372 - 4389786
Alignment:
| Q |
16 |
catttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccctccaagtgttatgaac |
115 |
Q |
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| T |
4389372 |
catttgctgtctcgagaaagtgataaggatagcctatgaagtatgttgaaagttgaaaatgcttctgcaaaaactgttgaaccctccaagtgttatgaac |
4389471 |
T |
|
| Q |
116 |
tagggcatgaattgggagttattaaaacaagggaaagacacgttaagcctcctggttttagctttattggcccaacatatctgaattcccaataaaagga |
215 |
Q |
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| T |
4389472 |
tagggcatgaattgggagttattaaaacaagggaaagacacgttaagccttctggttttagctttattggcccaacatatctgaattcccaataaaggga |
4389571 |
T |
|
| Q |
216 |
aaatatattcttgggttagacttgtctacttgatgcagtccactgtaaaacattttagagtagtattggcaataaatttgcaaacgggaaatagaaaaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389572 |
aaatatattcttgggttagacttgtctacttgatgcagtccactgtaaaacattttagagtagtattggcaataaatttgcaaacgggaaatagaaaaaa |
4389671 |
T |
|
| Q |
316 |
ggcgccggctaaaaataaaagtaaggttcatagggatttacaaaacaaaatagatgcacatgaggacattggtaaaagctttggtgtgttttcgcttcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4389672 |
ggcgccggctaaaaataaaagtaaggttcatagggatttacaaaacaaaatagatgcacatgaggacattggtaaaagctttggtgtgttttcgcttcat |
4389771 |
T |
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| Q |
416 |
gatgatgatgatgtc |
430 |
Q |
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| T |
4389772 |
gatgatgaggatgtc |
4389786 |
T |
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