View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21199_low_3 (Length: 386)
Name: NF21199_low_3
Description: NF21199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21199_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 6624286 - 6623932
Alignment:
| Q |
14 |
caaaggcacaacagaattactcaggaaattcaatactcagctgcaagaacaacgatgatgcgggaccttcatcggcattcctttacacctgcaatggcct |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6624286 |
caaaggcacaacagaattactcaggaaattcaatactcagctgcaagaacaacgatgatgcgggaccttcatcggcattcctttacacctgcaatggcct |
6624187 |
T |
|
| Q |
114 |
caacaaatcatgcatgacctatctaaccttcaaatccgtactaccttataactccgtttccacaatttccagcctcacttcatcaaacccgaacgagcta |
213 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6624186 |
caataaatcatgcatgacctatctaaccttcaaatccgtactaccttataactccgtttccacaatttccagcctcatttcatcaaacccgaacgagcta |
6624087 |
T |
|
| Q |
214 |
gccagaatcaacggcgccactttgctcacagttttcccatctggtaaagatgttattgtcccagcgaactgttcttgtttaaccaatgattattacaaag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6624086 |
gccagaatcaacggcgccactttgctcacagttttcccatctggtaaagatgttattgtcccagtgaactgttcttgtttaaccaatgattattacaaag |
6623987 |
T |
|
| Q |
314 |
ctgaaaccaaatatacattgggtccaaacccaacatatttcatagtagcaaacga |
368 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6623986 |
ctgaaaccaaatatatattgggtccaaacccaacatatttcatagtagcaaacga |
6623932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University