View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21199_low_5 (Length: 259)
Name: NF21199_low_5
Description: NF21199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21199_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 39544637 - 39544878
Alignment:
| Q |
3 |
acactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcac |
102 |
Q |
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| T |
39544637 |
acactggtgattgacttgttactttggagctttttctgaaacttgtttttgggtaagtagggtttgattcaccaatataaaggttgttattttcattcac |
39544736 |
T |
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| Q |
103 |
gtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaa |
202 |
Q |
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| T |
39544737 |
gtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaa |
39544836 |
T |
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| Q |
203 |
atgatagtgtgttgaactgccgttggagagagagttgataat |
244 |
Q |
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| T |
39544837 |
atgatagtgtgttgaactgccattggagagagagttgataat |
39544878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39521842 - 39522042
Alignment:
| Q |
1 |
agacactggtgattgacttgttactttggag---ctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttca |
97 |
Q |
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| T |
39521842 |
agacactggtgattgacttgttactttggagttactttcgctgaataattttttcgggtaagcatggtttgattcaccaatataaaggttgttattttca |
39521941 |
T |
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| Q |
98 |
ttcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaa |
197 |
Q |
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| T |
39521942 |
ttcacgtcgatatctgatccacaattgatgaagtatgtgtcttgaggatcgtatccgagtgaggggaattgtaatgatgagaattgaagaaaaaaagcaa |
39522041 |
T |
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| Q |
198 |
g |
198 |
Q |
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| T |
39522042 |
g |
39522042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 39581037 - 39581273
Alignment:
| Q |
10 |
tgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacgtcaata |
109 |
Q |
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| T |
39581037 |
tgattgacttgttactttggagcttttgctgaaaactgttttcggataagtagggtttgattcaccaatataaacgttgttactttcagtaacatcaaaa |
39581136 |
T |
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| Q |
110 |
tctgatccgcaattgatgaagtatgtgtcttggtgatcgt---atccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaagtaaaatga |
206 |
Q |
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| T |
39581137 |
tctgatccgcaattgatgaagtatgtgtgttggggattatataatccgagcgaggaaaattgtaatgatgagaattgaagaagaaaagttagtagaacga |
39581236 |
T |
|
| Q |
207 |
tagtgtgttgaactgccgttggagagagagttgataat |
244 |
Q |
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| T |
39581237 |
tagactgttgaattgcc-atggggagagagttgataat |
39581273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 39576537 - 39576720
Alignment:
| Q |
48 |
ttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacgtcaatatctgatccgcaattgatgaagtatgtgtcttggtgatc |
147 |
Q |
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| T |
39576537 |
ttttagggtaagcatggtttgattcaccaatataaagattcttattttcattcacgtcgatatctgatccacaattgatgaagtatgtctcttgatgatc |
39576636 |
T |
|
| Q |
148 |
gtatccgagtgagggaaattgtaatgatgcgaatt---gaagaagaaaagcaagtaaaatgatagtgtgttgaactgccgttgg |
228 |
Q |
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| T |
39576637 |
gtatccgagtgcagggaagtgtagtgatgagaattgaagaagaagaaaagccagtaaaatgatagagtgttgaattgccattgg |
39576720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 39525342 - 39525567
Alignment:
| Q |
4 |
cactggtgattgacttgttactttggagctttttctgaaacttgttttcgggtaagtagggtttgattcaccaatataaaggttattattttcattcacg |
103 |
Q |
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||||| ||||||||| ||| || |||||||||| |||||||||||||| ||||| | ||||||||||| |||||||||| |||||| ||||| | || |
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| T |
39525342 |
cactgatgattgactggtttctatggagcttttgctgaaacttgttttagggtagttggggtttgattccccaatataaactttattactttcagtaaca |
39525441 |
T |
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| Q |
104 |
tcaa------tatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaagaaaagcaa |
197 |
Q |
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| T |
39525442 |
gtaacgttgctatctgatccacaactgatgaagtatatgtcttgttcatcgtatccgagcgaggggaagtataatgatgagaattgaataagaaaagcaa |
39525541 |
T |
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| Q |
198 |
gtaaaatgatagtgtgttgaactgcc |
223 |
Q |
| |
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|||| ||||||| |||||||| |||| |
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| T |
39525542 |
gtaagatgatagagtgttgaattgcc |
39525567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 39581848 - 39581929
Alignment:
| Q |
107 |
atatctgatccgcaattgatgaagtatgtgtcttggtgatcgtatccgagtgagggaaattgtaatgatgcgaattgaagaa |
188 |
Q |
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| T |
39581848 |
atatcttatccacaactgatgaagtatatgtcttggtcatcgtatccaagtgaggcgaactgtaatgatgagaattgaagaa |
39581929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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