View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2119_high_1 (Length: 437)
Name: NF2119_high_1
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2119_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Original strand, 31241266 - 31241673
Alignment:
| Q |
13 |
aaaatcgagaggttaaatgcattaatgagtgatgaggttaaattcattaatgtgagtaatgaggttcatgtatcatttgaatatattttgattaattcca |
112 |
Q |
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| T |
31241266 |
aaaatcgagaggttaaatgcattaatgagtaatgaggttaaattcattaatgtgagtaatgaggttcatgtatcatttgaatatcttttgattaattcca |
31241365 |
T |
|
| Q |
113 |
atatattttgaagtttataacggagtattccagtttatatattagaagtaagggaaaccctgaccacatacttaagagaaacaggtatctacacctnnnn |
212 |
Q |
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| T |
31241366 |
atatattttgaagtttataacagagtattccagtttatatattagaagtaagggaaaccctgaccacatacttaagagaaacaggtatctacacctaaaa |
31241465 |
T |
|
| Q |
213 |
nnnttccgagtaagcacatacatataagttataacataatcaaatttatttttaagtaaaacagaaaaatcaaagagaacaaaacatagtttcttctaat |
312 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31241466 |
aaattctgagtaagcacatacatataagttataacataatcaaatttatttttaagtaaaacagaaaaatcaaagagaacaaaacatagtttcttctaat |
31241565 |
T |
|
| Q |
313 |
aaaagctaaagagaatgaaggggttatcttgcataccactgccagtgcctccagttgtctgattcggttccctgcagacggatactagattagttcatcg |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31241566 |
aaaagctaaagagaatgaaggggttatcttgcataccactgccagtgcctccagttgtctgattcggttccctgcagacggatactagattagttcatcg |
31241665 |
T |
|
| Q |
413 |
ttaaagag |
420 |
Q |
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|||||||| |
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| T |
31241666 |
ttaaagag |
31241673 |
T |
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