View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2119_high_6 (Length: 301)

Name: NF2119_high_6
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2119_high_6
NF2119_high_6
[»] scaffold0133 (4 HSPs)
scaffold0133 (123-301)||(9673-9851)
scaffold0133 (123-301)||(14012-14190)
scaffold0133 (1-129)||(9521-9649)
scaffold0133 (1-97)||(13869-13965)
[»] scaffold0256 (2 HSPs)
scaffold0256 (125-301)||(10295-10468)
scaffold0256 (29-128)||(10169-10268)
[»] chr6 (6 HSPs)
chr6 (1-130)||(16782119-16782248)
chr6 (214-281)||(16875998-16876065)
chr6 (123-181)||(16659176-16659233)
chr6 (128-181)||(16661196-16661248)
chr6 (2-111)||(16867041-16867150)
chr6 (213-281)||(16782917-16782985)
[»] chr3 (2 HSPs)
chr3 (2-120)||(38938385-38938502)
chr3 (159-217)||(38938275-38938333)
[»] chr5 (2 HSPs)
chr5 (126-217)||(11982848-11982938)
chr5 (2-56)||(11983113-11983167)


Alignment Details
Target: scaffold0133 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 123 - 301
Target Start/End: Original strand, 9673 - 9851
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 222  Q
    |||||||||||||  |||||  ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9673 ggaaaaaacaagtgttgaaggcacatggccatgaaagggaaaaaaacaaaattggaaaacttatcttatgaaacaacatcatgctcgttcatttgttctt 9772  T
Q  223 gtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc 301  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9773 gtgtggcctagatttcatcaaagaaaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc 9851  T

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Target: scaffold0133; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 123 - 301
Target Start/End: Original strand, 14012 - 14190
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 222  Q
    ||||||||||||||||||||  ||||||| |||||  |||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  14012 ggaaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgaccgttcatttgttctt 14111  T
Q  223 gtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc 301  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14112 gtgtggcctagatttcgtcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc 14190  T

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Target: scaffold0133; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 9521 - 9649
Alignment:
Q  1 tgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9521 tgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca 9620  T
Q  101 acatgtcaaaattggctgctatggaaaaa 129  Q
    |||||||||||||||||||||| ||||||    
T  9621 acatgtcaaaattggctgctatagaaaaa 9649  T

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Target: scaffold0133; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 13869 - 13965
Alignment:
Q  1 tgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttct 97  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13869 tgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttct 13965  T

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Target: scaffold0256 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 10295 - 10468
Alignment:
Q  125 aaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttcttgt 224  Q
    ||||||||||||||||||  ||||||| |||||  |||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10295 aaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaaaaaaattggaaaacttatcttatgtaacaacatcatgcccgttcatttgttcttgt 10394  T
Q  225 gtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattattatttaatatttcaagttggc 301  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||    
T  10395 gtggcctagatttcatcaaagagaatccaataccatataattgtaatacta---attatttaatatttcaagttggc 10468  T

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Target: scaffold0256; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 10169 - 10268
Alignment:
Q  29 ggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaacatgtcaaaattggctgctatggaaaa 128  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  10169 ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa 10268  T

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Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 16782119 - 16782248
Alignment:
Q  1 tgtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca 100  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16782119 tgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgtagtttttctgca 16782218  T
Q  101 acatgtcaaaattggctgctatggaaaaaa 130  Q
    || ||| || ||||| |||||| |||||||    
T  16782219 acttgtgaatattggttgctatagaaaaaa 16782248  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 281
Target Start/End: Complemental strand, 16876065 - 16875998
Alignment:
Q  214 tttgttcttgtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattatt 281  Q
    |||||||||||||||||||||||||| |  |||||||||| |  ||||||||  ||||||||||||||    
T  16876065 tttgttcttgtgtggcctagatttcaccggagagaatccagtcacaaataatattaatactaattatt 16875998  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 16659176 - 16659233
Alignment:
Q  123 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 181  Q
    |||||||||| ||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  16659176 ggaaaaaacatgttgttaaggtacatggcaatgaaggggaa-aaaacaaatttggaaaa 16659233  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 16661196 - 16661248
Alignment:
Q  128 aaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 181  Q
    ||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  16661196 aaacatgttgtgaaggtacatggcaatgaaggggaa-aaaataaaattggaaaa 16661248  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 16867150 - 16867041
Alignment:
Q  2 gtttggattggagat-gactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgca 100  Q
    |||||| |||||||| ||||||||| | ||||| |||| ||||  ||||||||||||||||| | |||| |||||| || |||| || ||||||  ||||    
T  16867150 gtttggtttggagatagactttgcttttggaagttgaa-tatgctttgttatttgttttcaagggttatttattaactcggtggttgcagttctgatgca 16867052  T
Q  101 acatgtcaaaa 111  Q
    || ||||||||    
T  16867051 acttgtcaaaa 16867041  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 16782917 - 16782985
Alignment:
Q  213 atttgttcttgtgtggcctagatttcatcaaagagaatccaataccaaataattgtaatactaattatt 281  Q
    ||||||||| | ||| |||||| |||| || |||||||||| |  |||||||| |||||||||||||||    
T  16782917 atttgttctagggtgacctagacttcaccagagagaatccagtcacaaataatagtaatactaattatt 16782985  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 38938502 - 38938385
Alignment:
Q  2 gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttctgcaa 101  Q
    |||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  38938502 gtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgcaa 38938404  T
Q  102 catgtcaaaattggctgct 120  Q
    | |||||| ||||||||||    
T  38938403 cttgtcaatattggctgct 38938385  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 38938333 - 38938275
Alignment:
Q  159 gggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 217  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38938333 gggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgtccattcatttg 38938275  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 11982938 - 11982848
Alignment:
Q  126 aaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 217  Q
    ||||||||||||  ||| |||||| ||||||||||||| |||||||||||||||||||||||   | ||||||||||||| |||||||||||    
T  11982938 aaaaacaagttggtaaggtacatgacaatgaaggggaa-aaaacaaaattggaaaacttatcaattcaaacaacatcatgtccattcatttg 11982848  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 11983167 - 11983113
Alignment:
Q  2 gtttggattggagatgactttgctctaggaagatgaaatatgagttgttatttgt 56  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||    
T  11983167 gtttggattggagatgactttgctctatgaagatgaaatatgcgttattatttgt 11983113  T

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