View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2119_low_1 (Length: 568)

Name: NF2119_low_1
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2119_low_1
NF2119_low_1
[»] chr8 (4 HSPs)
chr8 (126-550)||(41375621-41376045)
chr8 (21-111)||(41375498-41375588)
chr8 (38-97)||(10621383-10621442)
chr8 (41-111)||(30659984-30660054)
[»] chr7 (3 HSPs)
chr7 (38-111)||(44662457-44662530)
chr7 (41-111)||(46195949-46196019)
chr7 (38-110)||(6548707-6548778)
[»] chr2 (3 HSPs)
chr2 (38-111)||(24202178-24202251)
chr2 (70-110)||(38790090-38790130)
chr2 (47-84)||(40473543-40473580)
[»] chr6 (1 HSPs)
chr6 (47-99)||(7234002-7234054)
[»] chr3 (3 HSPs)
chr3 (38-109)||(9489505-9489576)
chr3 (47-97)||(27394544-27394594)
chr3 (47-99)||(40160772-40160824)
[»] chr1 (1 HSPs)
chr1 (38-94)||(32660858-32660914)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 126 - 550
Target Start/End: Original strand, 41375621 - 41376045
Alignment:
Q  126 ttaacatgagccgtcgaatttaattaacagtttagatttagnnnnnnnnnnnnnnnaatttaaacccctaacacaagaaatcagatactagtctttccct 225  Q
    |||||||||||||||| ||||||||||||||||||||||||               |||||||||||||||||||||||||||||  |||||||| ||||    
T  41375621 ttaacatgagccgtcggatttaattaacagtttagatttagtttttttcattttttaatttaaacccctaacacaagaaatcagaacctagtcttcccct 41375720  T
Q  226 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttcatccattttcgtcctggttgggaatctgttcatgccaaa 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41375721 tcctttcactcatcttcatcgagttctcgtcctcgtctgtcaaatagatattgcagttttaatccattttcgtcctggttgggaatctgttcatgccaaa 41375820  T
Q  326 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttaca 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41375821 gaagaagaacatatcatgaaaacatattggatttttaagctttttgacatgaagaggtggcaaacatttgtaagagaaacggattgatttggatcttaca 41375920  T
Q  426 acttattgttgatatttcaaagttctaacgagnnnnnnnntaataagaagggagcggtaataacagccacaagaggagcttaatgcatgaaggagatatt 525  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41375921 acttattgttgatatttcaaagttctaacgagaaaaaaaataataagaagggaggggtaataacagccacaagaggagcttaatgcatgaaggagatatt 41376020  T
Q  526 gattgaattgaaatcaatggaaaag 550  Q
    |||||||||||||||||||||||||    
T  41376021 gattgaattgaaatcaatggaaaag 41376045  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 41375498 - 41375588
Alignment:
Q  21 tgtgagcttagttcatttgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 111  Q
    ||||||||||| ||| ||| |||||||||| ||||| | |||||||||   |||||||| |||||||||||||||||| | ||||||||||    
T  41375498 tgtgagcttagctcacttgtattatgtatgtaggggttggggtttgaactccggacacctcactatttcacctttaaagtgaatttctcca 41375588  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Complemental strand, 10621442 - 10621383
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 97  Q
    |||||||||||||||||||   ||||||||| | ||||||||||| | ||||||||||||    
T  10621442 tgcattatgtatgcaggggtcagggtttgaaccccggacaccccattttttcacctttaa 10621383  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 30659984 - 30660054
Alignment:
Q  41 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 111  Q
    ||||||||||||||||   |||||  || | ||||||||||||||||||||||||||  ||||||| ||||    
T  30659984 attatgtatgcaggggtcggggttcaaaccccggacaccccactatttcacctttaaggtaaatttttcca 30660054  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 44662530 - 44662457
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 111  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  44662530 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 44662457  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 46195949 - 46196019
Alignment:
Q  41 attatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 111  Q
    ||||||||||||||||   ||||||||| | ||||||||||||||||||||||||||  | ||||||||||    
T  46195949 attatgtatgcaggggtcggggtttgaaccccggacaccccactatttcacctttaaggtgaatttctcca 46196019  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 6548778 - 6548707
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcc 110  Q
    |||||||||||||||||| |  ||||| |||   ||||||||||||||||||||||||||  | |||||||||    
T  6548778 tgcattatgtatgcagggccg-gggttcgaactccggacaccccactatttcacctttaaggtgaatttctcc 6548707  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 24202178 - 24202251
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctcca 111  Q
    ||||||||||||||||||||  ||||| ||| | ||||||||||||||||||||||||||  | ||||||||||    
T  24202178 tgcattatgtatgcaggggccggggttcgaaccccggacaccccactatttcacctttaaggtgaatttctcca 24202251  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 38790130 - 38790090
Alignment:
Q  70 ctcggacaccccactatttcacctttaaaataaatttctcc 110  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  38790130 ctcggacaccccactatttcacctttaagatgaatttctcc 38790090  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 40473580 - 40473543
Alignment:
Q  47 tatgcaggggcttgggtttgaatctcggacaccccact 84  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  40473580 tatgcaggggctggggtttgaacctcggacaccccact 40473543  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 7234002 - 7234054
Alignment:
Q  47 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 99  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  7234002 tatgcaggggctggggtttgaacctcggacaccccacttattcaccttgaaaa 7234054  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 9489505 - 9489576
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaataaatttctc 109  Q
    ||||||||||||||||||||  ||||| ||| |  ||| |||| |||||||||||||||| || ||||||||    
T  9489505 tgcattatgtatgcaggggccggggttcgaaccctggataccctactatttcacctttaagatgaatttctc 9489576  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 27394544 - 27394594
Alignment:
Q  47 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaa 97  Q
    |||||||||||| ||||||||| | |||||||||||||  |||||||||||    
T  27394544 tatgcaggggctggggtttgaaccccggacaccccacttattcacctttaa 27394594  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 40160772 - 40160824
Alignment:
Q  47 tatgcaggggcttgggtttgaatctcggacaccccactatttcacctttaaaa 99  Q
    ||||| |||||| ||||||||| | |||||||||||||  |||||||||||||    
T  40160772 tatgccggggctggggtttgaaccccggacaccccacttattcacctttaaaa 40160824  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 32660858 - 32660914
Alignment:
Q  38 tgcattatgtatgcaggggcttgggtttgaatctcggacaccccactatttcacctt 94  Q
    |||||||| |||||||||||| |||||  || | ||||||||||||| |||||||||    
T  32660858 tgcattatatatgcaggggctggggttcaaaccccggacaccccactttttcacctt 32660914  T

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