View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2119_low_11 (Length: 299)
Name: NF2119_low_11
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2119_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 48434509 - 48434240
Alignment:
| Q |
18 |
acatatagttatagg-atgtacaaaatcttactaatcttgttctataccgaaagacttgaatgaaaattggggacgaaagatgcactaagacataattca |
116 |
Q |
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| T |
48434509 |
acatataggtatagggatgtacaaaatcttactaatcgtgttctataccgaaagacttgaatgaaaattggggacgaaagatgccccaagacataattcc |
48434410 |
T |
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| Q |
117 |
gtgaaaggaaatgacggatttgggttgacttccgggtgatttgttccatttcattttatcgtaatgataacttagttcagatgactataaacatataaac |
216 |
Q |
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| T |
48434409 |
gtgaaaggaaatgacggatttgggttgacttccggatgatttgttccatttcattttatcgtaatgataacttaattcagatgactataaacacataaac |
48434310 |
T |
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| Q |
217 |
tttattttttgttacaaacttttgagcgtgttgtgaccgtggaattaaaccctaaacactgattgtgtct |
286 |
Q |
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| T |
48434309 |
tttattttttgttacaaacctttgagcgtgttgtgaccgtggaattaaacccaaaaaactgattgggtct |
48434240 |
T |
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