View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2119_low_2 (Length: 514)
Name: NF2119_low_2
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2119_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 102 - 496
Target Start/End: Complemental strand, 20868318 - 20867921
Alignment:
| Q |
102 |
gaaaagaagaaaacaaaggaggaatatatcatttgtgtcggcaaacatcatttgagttttaattttttatgagctaactcgatttacttaaggatacgaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
20868318 |
gaaaagaagaaaacaaaggaggaatatatcatttgtgtcggcaaacatcatttgagttttaatttttcatgagctaactcgatttacttaaggatacgga |
20868219 |
T |
|
| Q |
202 |
ttacatgggatttgctaattgaacgtttcatttttcatgacctaatacagactgctg---aaactcctaaccataaacttaatcttagtggctcttacag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
20868218 |
ttacatgggatttgctaattgaacgtttcatttttcatgacctaatacagactgctgctgaaactcctaaccataaacataatcttagtggctcttacag |
20868119 |
T |
|
| Q |
299 |
accatgcacggaaaaactaacatacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccctttataaagactcacctcaaata |
398 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20868118 |
accatgcacaaaaaaactaacagacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccctttataaagactcacctcaaata |
20868019 |
T |
|
| Q |
399 |
gctagaacatcctacctcagatcaattcaaataaacatcgaaacaatgtacctaaggatatccgattgtttatattaagaaatatttgcagcacatta |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20868018 |
gctagaacatcctacctcagatcaattcaaataaacatcgaaacaatgtacctaaggatacccgattgtttatattaagaaatatttgcagcacatta |
20867921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 3408524 - 3408380
Alignment:
| Q |
154 |
tgagttttaattttttatgagctaactcgatttacttaaggatacgaattacatggga-tttgctaattgaacgtttcatttttcatgacctaatacaga |
252 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||| |
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| T |
3408524 |
tgagttttaatttttcatgagctaactcgatttacttaaggatacgaattacatgggaatttgctaattga-cgtttcatttctcatgtcctaatacaga |
3408426 |
T |
|
| Q |
253 |
ctgctgaaactcctaaccataaacttaatcttagtggctcttacag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3408425 |
ctgctgaaactcctaaccataaacttaatcttagtggctcttacag |
3408380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 290 - 375
Target Start/End: Complemental strand, 3403781 - 3403696
Alignment:
| Q |
290 |
ctcttacagaccatgcacggaaaaactaacatacatgcatcgaatattcacaactcaaacacccatagttttgttctatattcccc |
375 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3403781 |
ctcttacagaccatgcacggaaaaactaacagacatgcattgaatattcacaactcaaacacccatagttttgttctataatcccc |
3403696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 3402542 - 3402478
Alignment:
| Q |
371 |
tcccctttataaagactcacctcaaatagctagaacatcctacctcagatcaattcaaataaaca |
435 |
Q |
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|
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|
| T |
3402542 |
tcccctttataaagactcacctcaaatagctagtgcatcctacctcaaatcaattcaaataaaca |
3402478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 3402455 - 3402405
Alignment:
| Q |
431 |
aaacatcgaaacaatgtacctaaggatatccgattgtttatattaagaaata |
482 |
Q |
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|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
3402455 |
aaacatcgaaacaatgtacctaaggatacccga-tgtttatattaagaaata |
3402405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 20868418 - 20868384
Alignment:
| Q |
1 |
catttcctttagagttgagctgaactagagctgta |
35 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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|
| T |
20868418 |
catttcctttagagttgagctggactagagctgta |
20868384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 249 - 435
Target Start/End: Original strand, 7129934 - 7130120
Alignment:
| Q |
249 |
cagactgctgaaactcctaaccataaacttaatcttagtggctcttacagaccatgcacggaaaaactaacatacatgcatcgaatattcacaactcaaa |
348 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||||||||||||||||| |
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| T |
7129934 |
cagactgctgaaattcctcaccacaaacttaatcttagtggctcttactgaccatgcactgcaaaactaacagacatgcaaagaatattcacaactcaaa |
7130033 |
T |
|
| Q |
349 |
cacccatagttttgttctatattcccctttataaagactcacctcaaatagctagaacatcctacctcagatcaattcaaataaaca |
435 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
7130034 |
cacccatagttttgttctctcatcccctttataaagactcacctcaaatagctagtgaatcctacctcaaatcaattaaaataaaca |
7130120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 496
Target Start/End: Original strand, 7130143 - 7130207
Alignment:
| Q |
431 |
aaacatcgaaacaatgtacctaaggatatccgattgtttatattaagaaatatttgcagcacatta |
496 |
Q |
| |
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|||||| ||||||||||||| ||| || ||||||||| ||||||||||||| ||||||||||||| |
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|
| T |
7130143 |
aaacattgaaacaatgtaccaaagaatccccgattgttgatattaagaaata-ttgcagcacatta |
7130207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 44738074 - 44738021
Alignment:
| Q |
102 |
gaaaagaagaaaacaaaggaggaatatatcatttgtgtcggcaaacatcatttg |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44738074 |
gaaaagaagaaaacaaaggaggaatatatcatttgtgtcggcaaacatcatttg |
44738021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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