View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2119_low_6 (Length: 365)
Name: NF2119_low_6
Description: NF2119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2119_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 169 - 356
Target Start/End: Original strand, 2213462 - 2213649
Alignment:
| Q |
169 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
268 |
Q |
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| T |
2213462 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtttcttgattgaaactctgtttcatcttttgaatgtctactttctacagtgttctgctt |
2213561 |
T |
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| Q |
269 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttc |
356 |
Q |
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| T |
2213562 |
ctattatttattgctcttgtgctttcgcagtgctgttagtggacatccctggtcgccttgttatagtattccttttactagcttcttc |
2213649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 2200811 - 2200932
Alignment:
| Q |
169 |
tctgtcagtagtccttgttgaatataaagggcaataagttgt-----ttcttgagtgaaactctgtttcatcttttgaatgtctactttctacagtgttc |
263 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2200811 |
tctgtcagtagtccttgttgaatataaagggcaataagttgtgttctttctggattgaaactctgtttcatcttttgaatgtctactttctacggtgttc |
2200910 |
T |
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| Q |
264 |
tgcttctattatttattgctct |
285 |
Q |
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| T |
2200911 |
tgcttctatgatttattgctct |
2200932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2200661 - 2200739
Alignment:
| Q |
18 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
96 |
Q |
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| T |
2200661 |
tcctagaatatacttttaatgccctctctccttaatacaatacactcactctgtttgttgcggattatggtaatatttg |
2200739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 2213313 - 2213387
Alignment:
| Q |
18 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactctgtttgttgcagattatggtaatatttg |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2213313 |
tcctagaatacacttttaatgccctctctccttaatacaatacattcactc----tgttgcagattatggtaatatttg |
2213387 |
T |
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