View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120-Insertion-1 (Length: 929)
Name: NF2120-Insertion-1
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 332 - 845
Target Start/End: Original strand, 7234863 - 7235378
Alignment:
| Q |
332 |
gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattg |
431 |
Q |
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| T |
7234863 |
gacctcatgtgaccacctaatgatttaccagaagcaaaactttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattg |
7234962 |
T |
|
| Q |
432 |
ttgaaaccacaaaa-cttcaagaattaactactaaaagagtaatctttatcagtnnnnnnnnnn--ccaaactttgaaacagaatcaataacaccaagaa |
528 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7234963 |
ttgaaaccacaaaaacttcaagaattaactactaaaagagtaatctttatcagtaaaaaaaaaaaaccaaactttgaaacagaatcaataacaccaagaa |
7235062 |
T |
|
| Q |
529 |
tgttgaattgggctatttcaattttcatgtaataaaccaaacgacccagatgagaaaaaatgatcagaaagtgaaaataagcacgaccaagatgagatta |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7235063 |
tgttgaattgggctatttcaattttcatgtaataaaccaaacgacccagatgagaaaaaatgatcagaaagtgaaaataagcacgacccagatgagatta |
7235162 |
T |
|
| Q |
629 |
tggagtgaaatcgtcatatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagttaataagaaagtgtgaaaattgatgtaataaag |
728 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7235163 |
tggagtgaaatcgtcatatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaagt---taagaaagtgtgaaaattgatgtaataaag |
7235259 |
T |
|
| Q |
729 |
gaagaaaaaagaaggtgtagtgacta--gtgtatagcatttggaagatgaattttgttgaagaagnnnnnnnngaatgaaactttgaagtagttgaagcg |
826 |
Q |
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| T |
7235260 |
gaagaaaaaagaaggtgtagtgagtagtgtgtatagcatttggaagatgaattttgatgaagaagaaaaaaaagaatgaaactttgaagtagttgaagcg |
7235359 |
T |
|
| Q |
827 |
atttttacctttgaagtga |
845 |
Q |
| |
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||||||||||||||||||| |
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| T |
7235360 |
atttttacctttgaagtga |
7235378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 67 - 233
Target Start/End: Original strand, 7234598 - 7234764
Alignment:
| Q |
67 |
atgacacttcatgtgaccaaacaaagctttcatagattgaaacccttcaccacattctttacacaatttatccaaaacaacatcaaaaggatcttgaatc |
166 |
Q |
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| T |
7234598 |
atgacacttcatgtgaccaaacaaagctttcatagattgaaaccctttaccacattctttacacaatttatccaaaacaacatcaaaaggatcttgaatc |
7234697 |
T |
|
| Q |
167 |
tcttgttcattagttgaatcagtgagtactctccaagttttctttggattctctctaagaccataac |
233 |
Q |
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| T |
7234698 |
tcttgttcattagttgaatcagtgagtactctccaagttttctttggattctctctaagaccataac |
7234764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 371 - 625
Target Start/End: Complemental strand, 30641756 - 30641512
Alignment:
| Q |
371 |
ctttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattgttgaaaccacaaaac-ttcaagaattaactactaaaaga |
469 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
30641756 |
ctttttctgcagaatttgcacacatgtttca------tcatttcttgatcttcttccattgttgaaac-acaaaaccttcaagaattaaccactaaaaga |
30641664 |
T |
|
| Q |
470 |
gtaatctttatcagtnnnnnnnnnnccaaactttgaaacagaatcaataacaccaagaatgttgaattgggctatttcaattttcatgtaataaaccaaa |
569 |
Q |
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| T |
30641663 |
gtaatatttatcagtaaaaaaa---ccaaactttgaaacagaatcaatgacaccaagaatgttgaattgggctatttaaattttcatg-aataaaccaaa |
30641568 |
T |
|
| Q |
570 |
cgacccagatgagaaaaaatgatcagaaagtgaaaataagcacgaccaagatgaga |
625 |
Q |
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| T |
30641567 |
cgacccagatgagaaaaaatgatcagaaggtgaaaataagcacgacctagatgaga |
30641512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 594 - 738
Target Start/End: Complemental strand, 30641514 - 30641373
Alignment:
| Q |
594 |
agaaagtgaaaataagcacgaccaagatgagattatggagtgaaatcgtcatatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaa |
693 |
Q |
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|||| ||||||||||| || ||| |||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30641514 |
agaaggtgaaaataagaacaacccagatgagattatggagcgaaatcgtcattttttgcaaaactcatatctgaaatgagataaaaattcaaactttgaa |
30641415 |
T |
|
| Q |
694 |
gttaataagaaagtgtgaaaattgatgtaataaaggaagaaaaaa |
738 |
Q |
| |
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|| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30641414 |
gt---taagaaaatgtgaaaattgatgtgataaaggaagaaaaaa |
30641373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 371 - 469
Target Start/End: Original strand, 26365657 - 26365749
Alignment:
| Q |
371 |
ctttttctgcagaatttgcacacatgtttcaatttcatcacttcttgatcttcttccattgttgaaaccacaaaa-cttcaagaattaactactaaaaga |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
26365657 |
ctttttctgcagaatttgcacacatgtttca------tcatttcttgatcttcttccattgttgaaa-cacaaaaccttcaagaattaaccactaaaaga |
26365749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 11678832 - 11678901
Alignment:
| Q |
82 |
accaaacaaagctttcatagattgaaacccttcaccacattctttacacaatttatccaaaacaacatca |
151 |
Q |
| |
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|||||||||||||||| ||||||||| || | |||||||||||| |||||||| ||||||||||||||| |
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| T |
11678832 |
accaaacaaagctttccgagattgaaaacccttaccacattctttgcacaatttgtccaaaacaacatca |
11678901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 594 - 738
Target Start/End: Complemental strand, 45229033 - 45228892
Alignment:
| Q |
594 |
agaaagtgaaaataagcacgaccaagatgagattatggagtgaaatcgtcatatcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaa |
693 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45229033 |
agaaggtgaaaataagcacgacccagatgagattatggagcgaaatcgtcatttcttgcaaaacccatatctgaaatgagataaaaattcaaactttgaa |
45228934 |
T |
|
| Q |
694 |
gttaataagaaagtgtgaaaattgatgtaataaaggaagaaaaaa |
738 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
45228933 |
gt---taagaaagtgtgaaaattgatgtggtaaaggaagaaaaaa |
45228892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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