View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2120-Insertion-10 (Length: 354)
Name: NF2120-Insertion-10
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-10 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 34694671 - 34694916
Alignment:
| Q |
8 |
aaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgcatcttcatatcaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694671 |
aaagcaaggaaacatacatgaaagtttgcacatggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgcatcttcatatcaa |
34694770 |
T |
|
| Q |
108 |
ttataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgttcagaacaaacctcatctcgtcttattattatgtcct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694771 |
ttataaacttccaaaatttcacaaggcaaagctaattagtttgatcaaagtgtatgtttttgttcagaacaaacctcatctcgtcttattattatgtcct |
34694870 |
T |
|
| Q |
208 |
tttcgtttgtgacatcactacctcaaaacaattcctctcccaattc |
253 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34694871 |
tttggtttgggacatcactacctcaaaacaattcctctcccaattc |
34694916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 34825557 - 34825512
Alignment:
| Q |
220 |
catcactacctcaaaacaattcctctcccaattcctatctaacatc |
265 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
34825557 |
catcacttcctcaaaacaattcttctcccaatccttatctaacatc |
34825512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 3903244 - 3903186
Alignment:
| Q |
296 |
ccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgcta |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3903244 |
ccatctcctttaacgcaacaaagatcatctcaattacggaaacataatcacctttgcta |
3903186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 24719482 - 24719540
Alignment:
| Q |
296 |
ccatctcctttaacgcaacaaagatcatctcaattactgaaacataatcacctttgcta |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24719482 |
ccatctcctttaacgcaacaaagatcatctcaattaccgaaacataatcacctttgcta |
24719540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University