View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120-Insertion-2 (Length: 824)
Name: NF2120-Insertion-2
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 28 - 484
Target Start/End: Original strand, 169528 - 169984
Alignment:
| Q |
28 |
tcctccgatcaagaaaagaggattatcattacaactgttagttagtaatggtgaaaggggttcccttgttgttgctggctggccttcttggctcactgct |
127 |
Q |
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| T |
169528 |
tcctccgatcaagaaaagaggattatcattacaactgttagttagtaatggtgaaaggggttcccttgttgttgctggctggccttcttggctcactgct |
169627 |
T |
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| Q |
128 |
gtcgccgcagaagccatcgctggctggatacctcgcacagctgactcttttcacaaattggacaaggcaggcttacagcactgtttacactgttgctttg |
227 |
Q |
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| T |
169628 |
gtcgccgcagaagccgttgctggctggatacctcgcacagctgactcttttcacaaattggacaaggcaggcttacagcactgtttacactgttgctttg |
169727 |
T |
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| Q |
228 |
aaaaaagttaaattcgctaatatggatcctcaaagtgtccgttttatggctagagaaattattctcctcagaaggaggcttcatcatccaaatgtcatca |
327 |
Q |
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| T |
169728 |
aaaaaagttaaattcgctaatatggatcttcaaagtgtcctttttatggctagagaaattattctcctcagaaggaggcttcatcatccaaatgtcatca |
169827 |
T |
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| Q |
328 |
aacttgaagggatcataccttgtacctcatttttgaatatatggtaacttggcgggcattgttgcaaggccagtaaaatgacatgtattatttgctgaat |
427 |
Q |
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| T |
169828 |
aacttgaagggagcataccttgtacctcatttttgaatatatggtaacttggcgggcattgttgcaaggccagtaaaatgaaatgtattatttgctgaat |
169927 |
T |
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| Q |
428 |
gtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
484 |
Q |
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| T |
169928 |
gtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
169984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 529 - 824
Target Start/End: Original strand, 169984 - 170289
Alignment:
| Q |
529 |
ccttctacctacccatcatctcattccaccctatattcctcttggcccataactaactctttccccactctcttatgcaatcccccattctagaatatat |
628 |
Q |
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| T |
169984 |
ccttctacctacccatcatctcattccaccctatattcctcttggcccataactaactcttcccccactctcttatgcaatcccccattctagaatatat |
170083 |
T |
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| Q |
629 |
atcttccatattttggttcccctgctaagattgtcaattggacccataccctctttgggtcgaacagtatgt----------ggcttatcgaacatactc |
718 |
Q |
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| T |
170084 |
atcttccatattttggttcccctgctaagagtgtaaattggacccataccctctttgggtcgaacagtatgtgggacactacggcttatctaacatactc |
170183 |
T |
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| Q |
719 |
aagcctttgcatatgttatcttgagcattccagattatgatgaaatactaataggtcctttttatcaacttctcgtatttgtaatggaagataaatttac |
818 |
Q |
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| T |
170184 |
aagcctttcaatatgttatcttcagcattccagattatgatgaaatactaataggtcctttttatcaacttcttgtatttgtaatggaagataaatttac |
170283 |
T |
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| Q |
819 |
agattc |
824 |
Q |
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|||||| |
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| T |
170284 |
agattc |
170289 |
T |
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