View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120-Insertion-3 (Length: 751)
Name: NF2120-Insertion-3
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-3 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 238 - 751
Target Start/End: Complemental strand, 4353058 - 4352549
Alignment:
| Q |
238 |
gtgaaggggatcattgtgcggataacattgcttctttcggtattaatatcaccggcttctattggtgggacactattccttatgttgcaaaagaagatta |
337 |
Q |
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| T |
4353058 |
gtgaagggaattattgtgcggataacattgcttctttcggtattaatatcaccggcttctattggtgggacactatcccttatgttgcaaaagaagatta |
4352959 |
T |
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| Q |
338 |
catcaggggtttttctaagtgactaacatgttttgttttttcagtgtaccaaacactgagtgcaatagttaatgatatcacgtcagtaatccttaccttc |
437 |
Q |
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| T |
4352958 |
catcaggggtttttctaagtgactaacatgttttgttttttcagtgtaccaaacactgagtgcaatagttaatgatatcacatcagtaatccttaccttc |
4352859 |
T |
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| Q |
438 |
tttttggattttcctgtatatttacttccataccaaatgatgtatgcaccaatattcccccatgttaattgctcaattgcaacattcgtgaccggcaagg |
537 |
Q |
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| T |
4352858 |
tttttggattttcctgtatatttacttccataccaaatgatgcatgcaccaatattcccccatgttaattgctcaattgcaacattcgtgaccggcaagg |
4352759 |
T |
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| Q |
538 |
ataatgcacaaaggctttccttccaagactttatatggcggtttgtttttagattttgcttatgtaatatgttcatgtgaaaatgagaggaagataacaa |
637 |
Q |
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| T |
4352758 |
ataatgcacaaaggctttccttccaagactttatatggcggtttgtttttagattttgcttatgtaatatgttcatgtgaaaatgagaggaagataacaa |
4352659 |
T |
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| Q |
638 |
ctaccaatgcttgcttatgtaatatgttcatgtgtgctcgagtgtttctgccaatatggcacatacagttgattctgttagtgtgtgcaattcttgtaaa |
737 |
Q |
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| T |
4352658 |
ctaccaat----gcttatgtaatatgttcatgtgtgctcgagtgtttctgccaatatggcacatacagttgattctgttagtgtatgcaattcttgtaaa |
4352563 |
T |
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| Q |
738 |
gcctcactgttgga |
751 |
Q |
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| T |
4352562 |
gcctcactgttgga |
4352549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 4353230 - 4353099
Alignment:
| Q |
64 |
tttttattgcattaatgtgaacaataactttattgatgccaatgtaattgagataaaaaagaaa-gacctccttgataatattagttttgggatgatgaa |
162 |
Q |
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| T |
4353230 |
tttttattgcattaatgtgaacaataactttattgatgccaatgtaattgagataaaaaagaaaagacctccttgataatattagttttgggatgatgaa |
4353131 |
T |
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| Q |
163 |
cattaacattaaaagcttcttagtatggaatt |
194 |
Q |
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| T |
4353130 |
cattaacattaaaagcgtcttagtatggaatt |
4353099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 4353309 - 4353232
Alignment:
| Q |
10 |
tatttgagtgtgatatatgttaaaaatttataataatatatgatttgtctgctctttttattgcattaatgtgaacaa |
87 |
Q |
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| T |
4353309 |
tatttgagtgtgatatatgttaaaaatttataataatatatgatttgtctgctctttttattgcattaatgtgaacaa |
4353232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 565
Target Start/End: Complemental strand, 4358286 - 4358126
Alignment:
| Q |
404 |
agttaatgatatcacg-tcagtaatccttaccttctttttggattttcctgtatatttacttccataccaaatgatgtatgcaccaatattcccccatgt |
502 |
Q |
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| T |
4358286 |
agttaatgatatcactatcaataatccttgctttctttttggattgtcttgcatacttacctccacaccaaatgatgcaggctcca---ttcaccaatgt |
4358190 |
T |
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| Q |
503 |
taattgctcaattgcaacattc-gtgaccggcaaggataatgcacaaaggctttccttccaaga |
565 |
Q |
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| T |
4358189 |
taattgctcaattgcaacatgctgtgactcgcaaggataatgtacagaggtttactttccaaga |
4358126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 4531211 - 4531182
Alignment:
| Q |
7 |
aattatttgagtgtgatatatgttaaaaat |
36 |
Q |
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| T |
4531211 |
aattatttgagtgtgatatatgttaaaaat |
4531182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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