View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2120-Insertion-4 (Length: 638)
Name: NF2120-Insertion-4
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 154 - 590
Target Start/End: Complemental strand, 38915635 - 38915200
Alignment:
| Q |
154 |
tgtgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttgagttgaataattaatttgtgtatttgaataa |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38915635 |
tgtgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttgaattgaataattaatttgtgtatttgaataa |
38915536 |
T |
|
| Q |
254 |
attttagaatcaaaagctacacataacattttaatttaggcctccagtcttaannnnnnnnnnnctcaaattcatccttcttactaaacattgtggaggt |
353 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38915535 |
attttagaatcaaaaactacacataacattttaatttaggtctccggtcttaatttttttttctctcaaattcatccttcttactaaacattgtggaggt |
38915436 |
T |
|
| Q |
354 |
tgatgatgtgttcattagattgtgtgcagtcataatcagagaaaaaactatatttgaaattgtaaaagacataagataattatgtgatctaaccatacta |
453 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| |
|
|
| T |
38915435 |
tgatgatgtgttcattagatcgtgtgcagtcataatcagagaaaaaactatatttgaaattgtaaaacacataa-ataattatgtgatctaaccctacta |
38915337 |
T |
|
| Q |
454 |
gtatgataatgtgcactatgaagaaaacaattgatctccgtcccacaaacaccaccactacacaaataggtatttgattgatgtctttgaaaaaataata |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38915336 |
atatgataatgtgcactatgaagaaaacaattgatctccgtcccacaaacatcaccactacacaaataggtatttgattgatgtctttgaaaaaataata |
38915237 |
T |
|
| Q |
554 |
ctaggagactatttgattgtctacattatatttagtt |
590 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
38915236 |
ctaagagactatttaattgtctacattatatttagtt |
38915200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 38915798 - 38915734
Alignment:
| Q |
8 |
ttgtgatatctcaaacaatggaggaggaagtatactgtgaattgtgatttatgtttactggttgg |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38915798 |
ttgtgatatctcaaacaatggaggaggaagtatactgtgaattgtgatttatgtttactggttgg |
38915734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 589 - 637
Target Start/End: Complemental strand, 38915131 - 38915085
Alignment:
| Q |
589 |
tttacataaaccaaattgaaatatgcataaatctcaaaagacgaaattg |
637 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
38915131 |
tttacataaaccaaattgaaatatgcat-aatctc-aaagacgaaattg |
38915085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 1500098 - 1500033
Alignment:
| Q |
156 |
tgtatttttggttttgtcttgacaaataattgattttgacttagttgattatgtaaaattaattttg |
222 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||||||| | |||||| ||||||||| |||||| |
|
|
| T |
1500098 |
tgtatttttggttctgagttgacaaa-aattgattttgactgaattgattttgtaaaattgattttg |
1500033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 8549927 - 8549976
Alignment:
| Q |
222 |
gagttgaataattaatttgtgtatttgaataaattttagaatcaaaagct |
271 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
8549927 |
gagttgaacaataaatttgtgtataagaataaattttataatcaaaagct |
8549976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Original strand, 31708247 - 31708300
Alignment:
| Q |
221 |
tgagttgaataattaatttgtgtatttgaataaattttagaatcaaaagctaca |
274 |
Q |
| |
|
|||||||||| || ||||||||| || |||| |||| ||||||||||||||||| |
|
|
| T |
31708247 |
tgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctaca |
31708300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16111 times since January 2019
Visitors: 1180