View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120-Insertion-6 (Length: 525)
Name: NF2120-Insertion-6
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Original strand, 17745125 - 17745622
Alignment:
| Q |
8 |
gaaccaaacacttccaatgttttccttggattctctacttgttgaagttgcattttgtaaggagaaaccttttcttgtttttgtaagtagatatctttgt |
107 |
Q |
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| T |
17745125 |
gaaccaaacacttccaatgttttccttggattatctacttgttgaagttgcattttgtaaggagaaaccttttcttgtttttgcaagtagacatctttgt |
17745224 |
T |
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| Q |
108 |
tcatcaagagttccgatgcagcacgagtctcggttttcttattcttaattgaatgatcagaagcatcttgatcatgtttgaagagtttttctgaggttgt |
207 |
Q |
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| T |
17745225 |
tcatcaagagttccgatgtagcacgcgtctcggttttcttattcttaattgaatgatcagaagcatcttgatcatgtttgaagagtttttctgaggttgt |
17745324 |
T |
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| Q |
208 |
ttttccttgaactgcacttttgttgaagctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttgcaaccaagagta |
307 |
Q |
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| T |
17745325 |
ttttccttgaactgcacttttgttgaagctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttgcaaccaagagta |
17745424 |
T |
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| Q |
308 |
gcaagaagactctttctatgaacttggttttttctactattacttgaagtagaatttttcaaagtagtttgtaaaagtgcactttggctattcaagcttg |
407 |
Q |
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| T |
17745425 |
gcaagaagactctttctatgaacttgattttttctactattacttgaagtagaatttttcaaagtagtttgtaaaagtgcactttggctattcaagcttg |
17745524 |
T |
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| Q |
408 |
attctgagccaacacttggagttccatattgaaccttgcactttctattctcttgttggtttttcaagtacttgagtttattggcatctaaggtagca |
505 |
Q |
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| T |
17745525 |
attctgagccaacacttggagttccatattgaaccttgcactttctattctcttgttggtttttcaagtacttgagtttattggcatctaaggtagca |
17745622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 24336469 - 24336410
Alignment:
| Q |
236 |
ctgatttcacctgcatgatcacttacatcaacagaattcttatcataacaagagcatttg |
295 |
Q |
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| T |
24336469 |
ctgatttcacttgcatggtcatttatatcaacagaattcttatcagaacaagagcatttg |
24336410 |
T |
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