View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2120-Insertion-7 (Length: 531)
Name: NF2120-Insertion-7
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120-Insertion-7 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 178 - 531
Target Start/End: Original strand, 12167803 - 12168156
Alignment:
| Q |
178 |
gaaactgcaggttcagcagatgatgatgaagttcctgtactactataagctccagcagtaccacctctgattatgtcagttaaatcacctaggtaattgt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12167803 |
gaaactgcaggttcagcagatgatgatgaagttcctgtactactatatgctccagcagtaccacctctgattatgtcagttaaatcacctaggtaattgt |
12167902 |
T |
|
| Q |
278 |
ccatacttgttgaagaaacaaagatactacacatgcttagttgaaaaacaagagtttcttgttattatgcatcatgttttggttttgaagcagcatatat |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12167903 |
ccatacttgttgaagaaacaaagatactacacatgcttagttgaaaaacaagagtttcttgttattatgcatcatgttttggttttgaagcagcatatat |
12168002 |
T |
|
| Q |
378 |
atatgaaatgaaaggaattttggaagagaatttaataagaaaagacatgcaataaggnnnnnnnggctattaaggagcaagaaaaagcaagtttagggaa |
477 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12168003 |
atatgaaatgaagggaattttggaagagaatttaataagaaaagacatgcaataaggtttttttggctattaaggagcaagaaaaagcaagtttagggaa |
12168102 |
T |
|
| Q |
478 |
caggtttttgggggttggaactgaaactgattgttctcttgttaataagaaaca |
531 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12168103 |
caggtttttgggggttggaactgaaactgattgttctcttgttaataagaaaca |
12168156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 12167639 - 12167703
Alignment:
| Q |
8 |
caccaaacatattcatgtttgttcctcctctattgtcttcaagaacagaagagaaactcaaaggg |
72 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12167639 |
caccaaacatattcatgtttgttcctcctctattgtcttcaagaacagaagagaaactcaaaggg |
12167703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University