View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2120-Insertion-9 (Length: 376)

Name: NF2120-Insertion-9
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2120-Insertion-9
NF2120-Insertion-9
[»] chr2 (7 HSPs)
chr2 (12-277)||(18736293-18736562)
chr2 (293-376)||(29941891-29941974)
chr2 (293-376)||(45547917-45548000)
chr2 (293-376)||(7486958-7487041)
chr2 (293-376)||(6288557-6288640)
chr2 (293-360)||(35171382-35171449)
chr2 (293-357)||(24192664-24192728)
[»] scaffold0237 (1 HSPs)
scaffold0237 (293-376)||(20448-20531)
[»] chr8 (14 HSPs)
chr8 (293-376)||(4656078-4656161)
chr8 (293-376)||(7149036-7149119)
chr8 (293-376)||(9458509-9458592)
chr8 (293-376)||(40264276-40264359)
chr8 (293-374)||(41385871-41385952)
chr8 (296-376)||(10795379-10795459)
chr8 (299-376)||(43604382-43604459)
chr8 (296-376)||(1605804-1605884)
chr8 (298-376)||(42275946-42276024)
chr8 (312-376)||(39371185-39371249)
chr8 (343-376)||(43489922-43489955)
chr8 (345-376)||(2113790-2113821)
chr8 (293-329)||(30381823-30381859)
chr8 (293-329)||(37566522-37566558)
[»] chr7 (11 HSPs)
chr7 (293-376)||(152863-152946)
chr7 (293-376)||(12252387-12252470)
chr7 (293-376)||(30111795-30111878)
chr7 (293-376)||(33475539-33475622)
chr7 (293-376)||(47912525-47912608)
chr7 (293-376)||(43056689-43056772)
chr7 (305-376)||(35089110-35089181)
chr7 (295-376)||(27417651-27417732)
chr7 (296-328)||(31495372-31495404)
chr7 (293-329)||(39300427-39300463)
chr7 (293-329)||(46197106-46197142)
[»] chr6 (5 HSPs)
chr6 (293-376)||(3109351-3109434)
chr6 (293-376)||(29864753-29864836)
chr6 (293-376)||(6475744-6475827)
chr6 (344-376)||(7104534-7104566)
chr6 (344-376)||(8790064-8790096)
[»] chr5 (8 HSPs)
chr5 (293-376)||(11632687-11632770)
chr5 (296-376)||(10553738-10553818)
chr5 (296-376)||(13949805-13949885)
chr5 (293-376)||(10553440-10553523)
chr5 (293-376)||(40411419-40411503)
chr5 (297-376)||(3603465-3603544)
chr5 (300-372)||(18676939-18677011)
chr5 (348-376)||(32827897-32827925)
[»] chr4 (12 HSPs)
chr4 (293-376)||(42315884-42315967)
chr4 (293-376)||(7809000-7809083)
chr4 (293-376)||(7820951-7821034)
chr4 (299-376)||(8583008-8583085)
chr4 (293-376)||(42217449-42217531)
chr4 (297-376)||(3434832-3434911)
chr4 (293-364)||(44930623-44930694)
chr4 (293-331)||(47686868-47686906)
chr4 (293-330)||(28846171-28846208)
chr4 (293-329)||(388618-388654)
chr4 (344-376)||(38234613-38234645)
chr4 (293-329)||(54510609-54510645)
[»] chr3 (19 HSPs)
chr3 (293-376)||(23360579-23360662)
chr3 (293-376)||(23367419-23367502)
chr3 (293-376)||(30589847-30589930)
chr3 (293-374)||(26292565-26292646)
chr3 (293-376)||(2124706-2124789)
chr3 (293-376)||(36054011-36054094)
chr3 (294-376)||(46223308-46223390)
chr3 (293-376)||(26556869-26556952)
chr3 (293-376)||(38628821-38628904)
chr3 (293-376)||(23697973-23698057)
chr3 (293-376)||(23716428-23716512)
chr3 (293-376)||(23734884-23734968)
chr3 (293-376)||(24149838-24149921)
chr3 (294-369)||(35731864-35731939)
chr3 (293-376)||(19551153-19551237)
chr3 (293-331)||(26004849-26004887)
chr3 (343-376)||(23754547-23754580)
chr3 (343-376)||(50899497-50899530)
chr3 (293-329)||(27593996-27594032)
[»] chr1 (11 HSPs)
chr1 (293-376)||(14389424-14389507)
chr1 (293-376)||(45319477-45319560)
chr1 (293-376)||(52706390-52706473)
chr1 (295-376)||(45535759-45535840)
chr1 (296-376)||(26881820-26881900)
chr1 (345-376)||(39758885-39758916)
chr1 (345-376)||(39764239-39764270)
chr1 (293-329)||(10897691-10897727)
chr1 (293-329)||(36403133-36403169)
chr1 (344-376)||(48198957-48198989)
chr1 (344-376)||(48207540-48207572)
[»] scaffold0153 (1 HSPs)
scaffold0153 (293-376)||(33826-33909)
[»] scaffold0016 (1 HSPs)
scaffold0016 (293-376)||(80794-80877)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 277
Target Start/End: Original strand, 18736293 - 18736562
Alignment:
Q  12 gggggagagtagtgatgaagtaccctacgcggccatggagacaagaatcgcaagatttggaccacgttttgtcattacataatccacgtgatcaactaca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  18736293 gggggagagtagtgatgaagtaccctacgcggccatggagacaagaatcgcaagatttggaccacgttttgtcattacataatccacgtgatca---aca 18736389  T
Q  112 tatatagtgaaaggggcaatgtaatggtgatagtgatggtgctgacacatatttgcattaaattgtattttgct-------atttgcagttatgagtgtt 204  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  18736390 tatatagtgaaaggggtaatgtaatggtgatagtgatggtgctgacacatatttgcattaaattgtattttgctatttgaaatttgcagttatgagtgtt 18736489  T
Q  205 aaggtgacctcatagtttaggaagaaaacggccatgagaattgaagtgatggagattatgaattctgtcatat 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18736490 aaggtgacctcatagtttaggaagaaaacggccatgagaattgaagtgatggagattatgaattctgtcatat 18736562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 29941974 - 29941891
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  29941974 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 29941891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 45548000 - 45547917
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  45548000 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 45547917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 7486958 - 7487041
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| || ||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  7486958 gggtgtattggattgagattttaaaagaccgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7487041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 6288557 - 6288640
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||| |||||||||||||||||||| |||||||||||| |||        |||||||||||||||||||||||||||||||||    
T  6288557 gggtggattggattgagattttaaaagactgttttgatagaaatttttttaaagattttaaaagactttgttggattgtattga 6288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Original strand, 35171382 - 35171449
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactt 360  Q
    |||||| ||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||    
T  35171382 gggtgtgttggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactt 35171449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 24192664 - 24192728
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaaga 357  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       |||||||||||||||    
T  24192664 gggtgtattggattgagattttaaaagactattttgataaaaaaagttttgaagattttaaaaga 24192728  T

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Target: scaffold0237 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 20448 - 20531
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  20448 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 20531  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 4656161 - 4656078
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  4656161 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 4656078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 7149119 - 7149036
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  7149119 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7149036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 9458592 - 9458509
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  9458592 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 9458509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 40264276 - 40264359
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  40264276 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 40264359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 41385871 - 41385952
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtatt 374  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||    
T  41385871 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtatt 41385952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 10795379 - 10795459
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  10795379 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 43604382 - 43604459
Alignment:
Q  299 attggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  43604382 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 43604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 1605804 - 1605884
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||||  ||||||||||||    
T  1605804 tgtattggattgagattttaaaatactgttttgatagaaaaaatcttgaagattttaaaagactttgcaggattgtattga 1605884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 376
Target Start/End: Complemental strand, 42276024 - 42275946
Alignment:
Q  298 tattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||| |||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  42276024 tattagattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 42275946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 39371185 - 39371249
Alignment:
Q  312 tttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  39371185 tttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 39371249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 43489955 - 43489922
Alignment:
Q  343 gaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||||    
T  43489955 gaagattttaaaagactttgttggattgtattga 43489922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 2113821 - 2113790
Alignment:
Q  345 agattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||    
T  2113821 agattttaaaagactttgttggattgtattga 2113790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 30381823 - 30381859
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  30381823 gggtgtattggattgagattttaaaagactattttga 30381859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 37566522 - 37566558
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  37566522 gggtgtattggattgagattttaaaagactattttga 37566558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 152946 - 152863
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  152946 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 152863  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 12252387 - 12252470
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| | |||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  12252387 gggtgtattggattgagattttaaaagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 12252470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 30111878 - 30111795
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       ||||||||||||||||||||||||||||||||||    
T  30111878 gggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 30111795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 33475622 - 33475539
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||| |||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  33475622 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 33475539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 47912525 - 47912608
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||| ||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  47912525 gggtatattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 47912608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 43056689 - 43056772
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||| ||||||||||||||| | |||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  43056689 gggtgtattgaattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 43056772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 376
Target Start/End: Original strand, 35089110 - 35089181
Alignment:
Q  305 ttgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  35089110 ttgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 35089181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 27417651 - 27417732
Alignment:
Q  295 gtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||| | | |||||||| |||       |||||||||||||||||||||| |||||||||||    
T  27417651 gtgtattggattgagattttaaaagagtattttgatagaaaaaatcttgaagattttaaaagactttgttagattgtattga 27417732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 31495404 - 31495372
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttg 328  Q
    ||||||||||||||||||||||||||| |||||    
T  31495404 tgtattggattgagattttaaaatactattttg 31495372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 39300427 - 39300463
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  39300427 gggtgtattggattgagattttaaaagactattttga 39300463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 46197106 - 46197142
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| | ||||||||    
T  46197106 gggtgtattggattgagattttaaaagattgttttga 46197142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 3109351 - 3109434
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  3109351 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 3109434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 29864753 - 29864836
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  29864753 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 29864836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 6475744 - 6475827
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||| ||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  6475744 gggtgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 6475827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 7104566 - 7104534
Alignment:
Q  344 aagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||||||||||    
T  7104566 aagattttaaaagactttgtgggattgtattga 7104534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 8790064 - 8790096
Alignment:
Q  344 aagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||||||||||    
T  8790064 aagattttaaaagactttgtgggattgtattga 8790096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 11632687 - 11632770
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  11632687 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 11632770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 10553818 - 10553738
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  10553818 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10553738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 13949805 - 13949885
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  13949805 tgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 13949885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 10553440 - 10553523
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||| |||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  10553440 gggtgtattggattgagatttaaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 10553523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 40411503 - 40411419
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgata-taaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||||||||||||  |||       ||||||||||||||||||||||||||||||||||    
T  40411503 gggtgtattggattgagattttaaaagactgttttgatagaaaaaaatcttgaagattttaaaagactttgttggattgtattga 40411419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 3603465 - 3603544
Alignment:
Q  297 gtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||| |||||| ||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  3603465 gtattagattgaaattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 3603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 18676939 - 18677011
Alignment:
Q  300 ttggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgta 372  Q
    ||||||||||||||||||| ||| |||||||| |||       ||||||||||||||| ||||||| ||||||    
T  18676939 ttggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagattttgttgtattgta 18677011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 376
Target Start/End: Original strand, 32827897 - 32827925
Alignment:
Q  348 ttttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||||||    
T  32827897 ttttaaaagactttgttggattgtattga 32827925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 42315967 - 42315884
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  42315967 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 42315884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 7809083 - 7809000
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||| ||||||| |||       ||||||||||||||||||||||||||||||||||    
T  7809083 gggtgtattggattgagattttaaaagactggtttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 7809000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 7821034 - 7820951
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||| ||||||| |||       ||||||||||||||||||||||||||||||||||    
T  7821034 gggtgtattggattgagattttaaaagactgatttgatagaaaaattcttgaagattttaaaagactttgttggattgtattga 7820951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 8583008 - 8583085
Alignment:
Q  299 attggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  8583008 attggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 8583085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 42217449 - 42217531
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||| |||||||||||||||| |||||||||||| |||       ||||||||| ||||||||||||||||||||||||    
T  42217449 gggtgtatttgattgagattttaaaagactgttttgatagaaaaaatcttgaagatttt-aaagactttgttggattgtattga 42217531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 376
Target Start/End: Original strand, 3434832 - 3434911
Alignment:
Q  297 gtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||| ||||||||||||||| ||| |||| ||| |||       ||||||||||||||||||||||||||||||||||    
T  3434832 gtattgaattgagattttaaaagactattttaatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 3434911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 44930694 - 44930623
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgtt 364  Q
    |||||||||||||||||||||||||| |||||||||||| |||        |||||||||||||||||||||    
T  44930694 gggtgtattggattgagattttaaaagactgttttgataaaaaaaatcttaaagattttaaaagactttgtt 44930623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 47686906 - 47686868
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgata 331  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  47686906 gggtgtattggattgagattttaaaagactattttgata 47686868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 28846171 - 28846208
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgat 330  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  28846171 gggtgtattggattgagattttaaaagactattttgat 28846208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Original strand, 388618 - 388654
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  388618 gggtgtattggattgagattttaaaagactattttga 388654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 38234645 - 38234613
Alignment:
Q  344 aagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||||||||||    
T  38234645 aagattttaaaagactttgtgggattgtattga 38234613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 54510645 - 54510609
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  54510645 gggtgtattggattgagattttaaaagactattttga 54510609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 23360662 - 23360579
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  23360662 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattga 23360579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 23367502 - 23367419
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  23367502 gggtgtattggattgagattctaaaagactgttttgatataaaaaatcttgaagattttaaaagactttgttggattgtattga 23367419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 30589930 - 30589847
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  30589930 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 30589847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 293 - 374
Target Start/End: Original strand, 26292565 - 26292646
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtatt 374  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||    
T  26292565 gggtgtattggattgagattttaaaagactgttttgatagaaaatatcttgaagattttaaaagactttgttggattgtatt 26292646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 2124706 - 2124789
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||| ||||||||||||||||||||||||||||||    
T  2124706 gggtgtattggattgagattttaaaagactgttttgataaaaaaaatcttgaaaattttaaaagactttgttggattgtattga 2124789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 36054011 - 36054094
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       ||||||||||||||||||||||||||||||||||    
T  36054011 gggtgtattggattgagattttaaaagactattttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 36054094  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 294 - 376
Target Start/End: Original strand, 46223308 - 46223390
Alignment:
Q  294 ggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||| ||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  46223308 ggtgtattgaattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 46223390  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 26556952 - 26556869
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||        ||||||||||||||||||||| |||||||||||    
T  26556952 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttaaagattttaaaagactttgttcgattgtattga 26556869  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 38628821 - 38628904
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       ||| ||||||||||||||||||| ||||||||||    
T  38628821 gggtgtattggattgagattttaaaagactcttttgatagaaaaaatcttgaaaattttaaaagactttgttgaattgtattga 38628904  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 23698057 - 23697973
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnn-gaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| | |||||||||| ||         ||||||||||||||||||||||||||||||||||    
T  23698057 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattga 23697973  T

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Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 23716512 - 23716428
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnn-gaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| | |||||||||| ||         ||||||||||||||||||||||||||||||||||    
T  23716512 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattga 23716428  T

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Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 23734968 - 23734884
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnn-gaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| | |||||||||| ||         ||||||||||||||||||||||||||||||||||    
T  23734968 gggtgtattggattgagattttaaaacattgttttgatagaatttatttttgaagattttaaaagactttgttggattgtattga 23734884  T

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Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 24149838 - 24149921
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||| ||||||||||| ||| |||||||| |||       |||||||||||| |||||||||||||| ||||||    
T  24149838 gggtgtattggattaagattttaaaagactattttgatagaaaaaatcttgaagattttaaatgactttgttggattatattga 24149921  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 35731939 - 35731864
Alignment:
Q  294 ggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggatt 369  Q
    ||||||||||||||||||||||| | | |||||||||| |||       |||||||||||||||||||||||||||    
T  35731939 ggtgtattggattgagattttaacagattgttttgatagaaaaaatcttgaagattttaaaagactttgttggatt 35731864  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 19551153 - 19551237
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatata-aannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |          ||||||||||||||||||| ||||||||||||||    
T  19551153 gggtgtattggattgagattttaaaagactgttttgatagagtttttttttgaagattttaaaagactttattggattgtattga 19551237  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 331
Target Start/End: Original strand, 26004849 - 26004887
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgata 331  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  26004849 gggtgtattggattgagattttaaaagactgttttgata 26004887  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 343 - 376
Target Start/End: Complemental strand, 23754580 - 23754547
Alignment:
Q  343 gaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||||    
T  23754580 gaagattttaaaagactttgttggattgtattga 23754547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 50899497 - 50899530
Alignment:
Q  343 gaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||||    
T  50899497 gaagattttaaaagactttgttggattgtattga 50899530  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 27594032 - 27593996
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  27594032 gggtgtattggattgagattttaaaagactattttga 27593996  T

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Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 14389507 - 14389424
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  14389507 gggtgtattggattgagattttaaaagactgttttgatagaaatttttttgaagattttaaaagactttgttggattgtattga 14389424  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 45319560 - 45319477
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| |||||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  45319560 gggtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 45319477  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 52706473 - 52706390
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| | |||||||||| |||       ||||||||||||||||||||||||||||||||||    
T  52706473 gggtgtattggattgagattttaaaagaatgttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 52706390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 45535840 - 45535759
Alignment:
Q  295 gtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||| |||||||||||| |||       |||||||||| |||| ||||||||||||||||||    
T  45535840 gtgtattggattgagattttaaaagactgttttgatagaaaaaatcttgaagattttagaagattttgttggattgtattga 45535759  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 296 - 376
Target Start/End: Original strand, 26881820 - 26881900
Alignment:
Q  296 tgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||| ||| |||||||| |||        ||||||||| |||||||||||||||||||||||    
T  26881820 tgtattggattgagattttaaaagactattttgatagaaaaaatcttaaagattttagaagactttgttggattgtattga 26881900  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 39758916 - 39758885
Alignment:
Q  345 agattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||    
T  39758916 agattttaaaagactttgttggattgtattga 39758885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 39764270 - 39764239
Alignment:
Q  345 agattttaaaagactttgttggattgtattga 376  Q
    ||||||||||||||||||||||||||||||||    
T  39764270 agattttaaaagactttgttggattgtattga 39764239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 10897727 - 10897691
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  10897727 gggtgtattggattgagattttaaaagactattttga 10897691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 329
Target Start/End: Complemental strand, 36403169 - 36403133
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttga 329  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  36403169 gggtgtattggattgagattttaaaagactattttga 36403133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 48198989 - 48198957
Alignment:
Q  344 aagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||||||||||    
T  48198989 aagattttaaaagactttgtgggattgtattga 48198957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 48207572 - 48207540
Alignment:
Q  344 aagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||| ||||||||||||    
T  48207572 aagattttaaaagactttgtgggattgtattga 48207540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 33826 - 33909
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       ||||||||||||||||||||||||||||||||||    
T  33826 gggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 33909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 293 - 376
Target Start/End: Original strand, 80794 - 80877
Alignment:
Q  293 gggtgtattggattgagattttaaaatactgttttgatataaannnnnnngaagattttaaaagactttgttggattgtattga 376  Q
    |||||||||||||||||||||||||| ||| |||||||| |||       ||||||||||||||||||||||||||||||||||    
T  80794 gggtgtattggattgagattttaaaagacttttttgatagaaaaaatcttgaagattttaaaagactttgttggattgtattga 80877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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