View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21200_high_3 (Length: 465)
Name: NF21200_high_3
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21200_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 4204852 - 4205236
Alignment:
| Q |
1 |
atataggtataaaggacaggtgtggaaagcaatagtgggatgtgacaagtgagaggttttgtttggcataactgagagtctgataagagagagtgtgggc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4204852 |
atataggtataaaggacaggtgtggaaagcaatagtgggatgtgacaagtgagaggttttgtttggcataactgagagtctgataagagagagtgtgggc |
4204951 |
T |
|
| Q |
101 |
cccaagccaacacgacacaaacacacac----gtactagtacagaagagcagagtaagaaagaacagtcgtgtctttgaaggacacagacacagacccag |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
4204952 |
cccaagccaacacgacacaaacacacacacacgtactagtacagaagagcagagtaagaa----cagtcgtgtctttgaaggaca------cagacccag |
4205041 |
T |
|
| Q |
197 |
acattcattcagtgatgactccgtttgattcagagttaagaccggaagcgatctaattaaatgccaacaaaatcgcgttatttttgttaaggaacaaacc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4205042 |
acattcattcagtgatgactccgtttgattcagagttaagaccggaagcgatctaaataaatgcctacaaaatcgcgttatttttgttaaggaacaaacc |
4205141 |
T |
|
| Q |
297 |
aagtcattggtacttccatgttcctcgttcaacca------cacattcacattcacattccccttctcttcatttctcactcctacatcaccatt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4205142 |
aagtcattggtacttccatgttcctcgttcaaccacacattcacattcacattcacattccccttctcttcatttctcactcctacatcaccatt |
4205236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 4205259 - 4205300
Alignment:
| Q |
420 |
cccttctttttcgccgctatgtcatgttgattcttctctctc |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4205259 |
cccttctttttcgccgctatgtcatgttgattcttctctctc |
4205300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University