View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21200_high_4 (Length: 437)
Name: NF21200_high_4
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21200_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 437
Target Start/End: Complemental strand, 31055861 - 31055441
Alignment:
| Q |
14 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055861 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
31055762 |
T |
|
| Q |
114 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaacca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31055761 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaatca |
31055662 |
T |
|
| Q |
214 |
tacactggtaactgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagag |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055661 |
tacactggcaactgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagag |
31055562 |
T |
|
| Q |
314 |
gaattgaattaattcctatgactgaaaaacaaagaatggaggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaac |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31055561 |
gaattgaattaattcctatgactgaaaaacaaagaat---ggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaac |
31055465 |
T |
|
| Q |
414 |
tagaagcatagggatttgttgatc |
437 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
31055464 |
tagaagcatagggatttgttgatc |
31055441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 34742763 - 34742869
Alignment:
| Q |
16 |
agaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgta |
115 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| || | || ||| ||||||||| ||| || |||||||| |
|
|
| T |
34742763 |
agaacaagaattgctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattcttggccttctatgta |
34742862 |
T |
|
| Q |
116 |
cctgaaa |
122 |
Q |
| |
|
|||||| |
|
|
| T |
34742863 |
tctgaaa |
34742869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 34743127 - 34743191
Alignment:
| Q |
361 |
ttcattacattcttctctccaacgatggcttcattaagtgcttctcttccaactagaagcatagg |
425 |
Q |
| |
|
||||||||| ||||||||||||| || || ||||| || ||||||||| |||| ||||||||||| |
|
|
| T |
34743127 |
ttcattacagtcttctctccaacaatagcatcatttagcgcttctctttcaacaagaagcatagg |
34743191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University