View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21200_high_5 (Length: 304)

Name: NF21200_high_5
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21200_high_5
NF21200_high_5
[»] chr5 (1 HSPs)
chr5 (20-304)||(4204567-4204851)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 4204567 - 4204851
Alignment:
Q  20 taccatgtatagtgtatcgaaa-tttacatcaacgttcaatcatatttcaatatataatttacagtaaattagaccatgtaaggtaaattattatggtaa 118  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4204567 taccatgt-tagtgtatcgaaaatttacatcaacgttcaatcatatttcaatatataatttacagtaaattagaccatgtaaggtaaattattatggtaa 4204665  T
Q  119 ataaaagctgatatcatctttaagtattgatgatgataaaatcgttgtcaatgacaaatatttgtagtttattatggacaggatagaatttaaaatgaat 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4204666 ataaaagctgatatcatctttaagtattgatgatgatgaaatcgttgtcaatgacatatatttgtagtttattatggacaggatagaatttaaaatgaat 4204765  T
Q  219 cttgtttgtaactttaattaaagaggtgtagaaagcaatacatatgcttgttttttatgaggaggaaaagaaaatcaaaattctat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  4204766 cttgtttgtaactttaattaaagaggtgtagaaagcaatacatatgtttgttttttatgaggaggaaaagaaaatcaaaattctat 4204851  T

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