View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21200_high_6 (Length: 270)
Name: NF21200_high_6
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21200_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 5302418 - 5302520
Alignment:
| Q |
166 |
gagttatgttttaccaatttcatttattgtcagtcaaaagttccaaaagaaaaaattatatccttttggtcaatttattcataagcttcctatgctactc |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
5302418 |
gagttatgttttaccaatttcatttattgtcagtcaaaagttccaaaagaaaaaattatatctttttggtcaatttattcataagcttcctatgc-actc |
5302516 |
T |
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| Q |
266 |
cact |
269 |
Q |
| |
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|||| |
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| T |
5302517 |
cact |
5302520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 5302253 - 5302335
Alignment:
| Q |
1 |
atcattcccaaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttatata |
83 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5302253 |
atcattcccaaaataactctcaaacccaaaattacaattttcaatacacaatgactcctcaagactcaaacaccctttatata |
5302335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 19100578 - 19100656
Alignment:
| Q |
4 |
attcccaaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttatata |
83 |
Q |
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| T |
19100578 |
attcccaaattaaccctcaaacccaaaactacaatttccaat-cacaatgattcctcaaggctaaaacaccctttatata |
19100656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 15619942 - 15619868
Alignment:
| Q |
9 |
caaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttatata |
83 |
Q |
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||||||||||||||||| |||| |||||||||| ||||| ||||| | | |||| ||||||||||||||||||| |
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| T |
15619942 |
caaaataaccctcaaacccaaatctacaattttcgatacataatgattccacaaggctcaaacaccctttatata |
15619868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20681394 - 20681312
Alignment:
| Q |
1 |
atcattcccaaaataaccctcaaactcaaaattacaattttcaatacacaatgacttctcaagactcaaacaccctttatata |
83 |
Q |
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|||||||| ||||||||||||| || ||||| || ||||||||||||||||||| | || ||| | ||||||||||||||| |
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| T |
20681394 |
atcattccaaaaataaccctcacacccaaaactaaaattttcaatacacaatgattccttaaggcaataacaccctttatata |
20681312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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