View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21200_high_9 (Length: 219)

Name: NF21200_high_9
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21200_high_9
NF21200_high_9
[»] chr7 (2 HSPs)
chr7 (18-109)||(36133070-36133161)
chr7 (171-205)||(36134619-36134653)
[»] chr8 (1 HSPs)
chr8 (18-109)||(30813423-30813514)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 36133161 - 36133070
Alignment:
Q  18 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36133161 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 36133070  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 36134619 - 36134653
Alignment:
Q  171 ccccatctttttccatttggtgattatgctctgtg 205  Q
    |||||||||||||||||||||||||||||||||||    
T  36134619 ccccatctttttccatttggtgattatgctctgtg 36134653  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 30813514 - 30813423
Alignment:
Q  18 acagctagcttcgtagccttctctttccattttaagagagataactctttaagcatgtacgcttctgcttcattcttcacatcctgtttcaa 109  Q
    ||||||||| | ||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  30813514 acagctagcgttgtagccttctcttgccatttcaacagagataactctttgagcatgtatgcttctgcttcattcttcacatcctgtttcaa 30813423  T

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