View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21200_low_10 (Length: 208)

Name: NF21200_low_10
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21200_low_10
NF21200_low_10
[»] chr8 (1 HSPs)
chr8 (24-192)||(8811724-8811894)
[»] chr7 (3 HSPs)
chr7 (13-103)||(37447922-37448012)
chr7 (40-127)||(25841177-25841265)
chr7 (20-73)||(10646072-10646125)
[»] chr4 (6 HSPs)
chr4 (64-127)||(54570473-54570537)
chr4 (67-130)||(54570911-54570975)
chr4 (40-130)||(8652037-8652128)
chr4 (40-130)||(8663844-8663935)
chr4 (65-130)||(53751526-53751592)
chr4 (20-73)||(23538182-23538235)
[»] chr3 (1 HSPs)
chr3 (47-96)||(50354046-50354095)
[»] chr6 (3 HSPs)
chr6 (68-126)||(27120068-27120127)
chr6 (47-96)||(23383718-23383767)
chr6 (40-130)||(24848312-24848403)
[»] chr1 (4 HSPs)
chr1 (25-72)||(49195427-49195474)
chr1 (20-78)||(12606600-12606658)
chr1 (25-77)||(40908370-40908422)
chr1 (25-73)||(46566627-46566675)
[»] chr5 (1 HSPs)
chr5 (20-73)||(43469569-43469622)
[»] chr2 (1 HSPs)
chr2 (29-77)||(3081257-3081305)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 8811894 - 8811724
Alignment:
Q  24 agtggttggcagatgagattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaa 122  Q
    ||||||| || |||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||    
T  8811894 agtggttcgcggatgggattagcattaattacgtattagaaagggaaaatgaggatgaattagggctaacataccagcttgacaagtgtagcttttataa 8811795  T
Q  123 taaaggattaaaattaatggccattgactaac-tttttatacttactctaggagaaccaacaaatccctct 192  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  8811794 taaaggattaaatataatggccattgactaacttttttatacttactctaggagaaccaacgaatccctct 8811724  T

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Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 37447922 - 37448012
Alignment:
Q  13 gagatgaagggagtggttggcagatgagattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt 103  Q
    |||||| ||| ||| ||||||||||| ||||  ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||    
T  37447922 gagatgtaggaagttgttggcagatgggattgacattaattacgtattagggaggaaaaatgaggatgaattagggctaacataccagctt 37448012  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 40 - 127
Target Start/End: Original strand, 25841177 - 25841265
Alignment:
Q  40 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag 127  Q
    ||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| ||||    
T  25841177 gattaacattaattacgtattacggagggaaaatgaggatggattagggctaacatgctagcttgacaagtgtagcttttataaaaaag 25841265  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 10646072 - 10646125
Alignment:
Q  20 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 73  Q
    |||| |||||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  10646072 agggtgtggttggcagatgagattagcattaattacggatttgggagggaaaat 10646125  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 54570473 - 54570537
Alignment:
Q  64 gagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaag 127  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  54570473 gagggaaaatgaggataaattagggctaacatgccagcttgacaagtgtagcttttataataaag 54570537  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 54570911 - 54570975
Alignment:
Q  67 ggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 130  Q
    ||||||||||||| | |||||||||||||||||||||  |||||||||||||| |||||||||||    
T  54570911 ggaaaatgaggataagttagggctaacatgccagcttggcaagtgtagcttttataataaaggat 54570975  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 8652037 - 8652128
Alignment:
Q  40 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 130  Q
    ||||| |||||||||||  |||| |||||||| |||| ||| |||||||| | ||||| |||||  ||||| |||||||| |||||||||||    
T  8652037 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8652128  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 8663844 - 8663935
Alignment:
Q  40 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 130  Q
    ||||| |||||||||||  |||| |||||||| |||| ||| |||||||| | ||||| |||||  ||||| |||||||| |||||||||||    
T  8663844 gattaacattaattacggtttagggagggaaactgagaatggattagggcaagcatgctagcttggcaagtctagcttttataataaaggat 8663935  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 53751526 - 53751592
Alignment:
Q  65 agggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 130  Q
    |||||||||||| ||| |||||||| ||||||| ||||| |||||| || ||||| |||||||||||    
T  53751526 agggaaaatgagaatggattagggcaaacatgctagcttgacaagtctaacttttataataaaggat 53751592  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 23538182 - 23538235
Alignment:
Q  20 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 73  Q
    |||| |||||||||||||||||||| ||||||||||  ||||| |||| |||||    
T  23538182 agggtgtggttggcagatgagattagcattaattacagattagggaggaaaaat 23538235  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 50354046 - 50354095
Alignment:
Q  47 attaattacgtattagagagggaaaatgaggatgaattagggctaacatg 96  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  50354046 attaattacgtattagggagggaaaatgaggatggattagggctaacatg 50354095  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 27120068 - 27120127
Alignment:
Q  68 gaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaa 126  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||||||| |||||||    
T  27120068 gaaaatgaggatgaattagggctaacatgtcagcttggcaagtgtagcttttataataaa 27120127  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 23383767 - 23383718
Alignment:
Q  47 attaattacgtattagagagggaaaatgaggatgaattagggctaacatg 96  Q
    |||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  23383767 attaattacgtattagggagggaaaataaggatggattagggctaacatg 23383718  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 24848312 - 24848403
Alignment:
Q  40 gattatcattaattacgtattagagagggaaaatgaggatgaattagggctaacatgccagctt-acaagtgtagcttttctaataaaggat 130  Q
    ||||| |||||||||||  |||| ||| ||||||||| ||  |||||||| ||||||| |||||  ||||| |||||||| |||||||||||    
T  24848312 gattaacattaattacggtttagggagcgaaaatgagaatagattagggcaaacatgctagcttggcaagtctagcttttataataaaggat 24848403  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 49195427 - 49195474
Alignment:
Q  25 gtggttggcagatgagattatcattaattacgtattagagagggaaaa 72  Q
    |||||||||||||||||||| ||||||||||  ||||| |||||||||    
T  49195427 gtggttggcagatgagattaacattaattacagattagggagggaaaa 49195474  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 12606600 - 12606658
Alignment:
Q  20 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaatgagga 78  Q
    |||| |||||||||||||| ||||| ||||||||| | ||||| |||||||||| ||||    
T  12606600 agggtgtggttggcagatgggattagcattaattatggattagggagggaaaataagga 12606658  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 40908422 - 40908370
Alignment:
Q  25 gtggttggcagatgagattatcattaattacgtattagagagggaaaatgagg 77  Q
    |||||||||||||||||||| |||||| | | | |||| ||||||||||||||    
T  40908422 gtggttggcagatgagattaacattaaattcatgttagggagggaaaatgagg 40908370  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 46566675 - 46566627
Alignment:
Q  25 gtggttggcagatgagattatcattaattacgtattagagagggaaaat 73  Q
    |||||||||||||||||||| ||||||||||  ||| | ||||||||||    
T  46566675 gtggttggcagatgagattagcattaattacaaatttgggagggaaaat 46566627  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 43469569 - 43469622
Alignment:
Q  20 agggagtggttggcagatgagattatcattaattacgtattagagagggaaaat 73  Q
    |||| ||||||||||||||| |||| ||||||||||| ||| | ||||||||||    
T  43469569 agggtgtggttggcagatgaaattaacattaattacggatttgggagggaaaat 43469622  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3081305 - 3081257
Alignment:
Q  29 ttggcagatgagattatcattaattacgtattagagagggaaaatgagg 77  Q
    |||||||||||||||| |||||| | ||| |||| ||||||||||||||    
T  3081305 ttggcagatgagattaacattaaatgcgtgttagggagggaaaatgagg 3081257  T

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