View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21200_low_2 (Length: 480)
Name: NF21200_low_2
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21200_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 47053671 - 47054130
Alignment:
| Q |
1 |
tgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaatagagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47053671 |
tgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaaccctaacagagct |
47053770 |
T |
|
| Q |
101 |
tagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagctt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053771 |
tagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaacattggcagctt |
47053870 |
T |
|
| Q |
201 |
catcagtctacaaaatgcttgtggcagcgctagctgacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053871 |
catcagtctacaaaatgcttgtggcagcgctagctgacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttgtccaaggtaga |
47053970 |
T |
|
| Q |
301 |
ggcatcatagtaaagttcctaaatagtttatttctactttatagggacatagtcatggcacatgatcaacactaaaaattttaaccttgaagcattggaa |
400 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47053971 |
ggcatcatagtaaagttcctaaatagattatttctactttatagggacatagtcatggcacatgatcaacactaaaatttttaaccttgaagcattggaa |
47054070 |
T |
|
| Q |
401 |
agtaattaggagggaatggttttcatctgggtgagaatgtagagaagaaaggggacgaag |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47054071 |
agtaattaggagggaatggttttcatctgggtgagaatgtagagaagaaaggggacgaag |
47054130 |
T |
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