View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21200_low_8 (Length: 227)
Name: NF21200_low_8
Description: NF21200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21200_low_8 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 14739819 - 14739596
Alignment:
| Q |
7 |
ggtatatcttatatcctgacttggatgctatcatttgtcaattgttgtgtttgtgtaatgttatttttgtcgctgatttgtttattatttctt---tagg |
103 |
Q |
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| T |
14739819 |
ggtatatcttatatcctgacttggatgctatcatttgtcaattgtcgtgtttgtgtaatgttatttttgtcgctgatttgtttattatttcttatttagg |
14739720 |
T |
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| Q |
104 |
tatattgctcacatttggtggatgaagaagtgacaataaactcagtgccctgttgtttcaaatcttctctcaaatttctttggatttcagattttaatgg |
203 |
Q |
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| T |
14739719 |
tatattgcttacatttggtggatgaagaagtgacaataaactcagtgccctgttgtttcaaatcttctctcaaatttctttggatttcagattttaatgg |
14739620 |
T |
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| Q |
204 |
atacaaatatgaagtccaaatgat |
227 |
Q |
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| T |
14739619 |
atacaaatatgaagtccaaatgat |
14739596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 17586393 - 17586616
Alignment:
| Q |
7 |
ggtatatcttatatcctgacttggatgctatcatttgtcaattgttgtgtttgtgtaatgttatttttgtcgctgatttgtttattatttctt---tagg |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17586393 |
ggtatatcttatatcctgacttggatgctatcatttgtcaattgtcgtgtttgtgtaatgttatttttgtcgctgatttgtttattatttcttatttagg |
17586492 |
T |
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| Q |
104 |
tatattgctcacatttggtggatgaagaagtgacaataaactcagtgccctgttgtttcaaatcttctctcaaatttctttggatttcagattttaatgg |
203 |
Q |
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| T |
17586493 |
tatattgcttacatttggtggatgaagaagtgacaataaactcagtgccctgttgtttcaaatcttctctcaaatttctttggatttcagattttaatgg |
17586592 |
T |
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| Q |
204 |
atacaaatatgaagtccaaatgat |
227 |
Q |
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| T |
17586593 |
atacaaatatgaagtccaaatgat |
17586616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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