View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_high_1 (Length: 810)
Name: NF21201_high_1
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_high_1 |
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| [»] scaffold0077 (4 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 521 - 803
Target Start/End: Original strand, 49985359 - 49985641
Alignment:
| Q |
521 |
actttcgttaaaaataacttgttttgaaattggggttttggaaaacggttgggtatgaattatttttgaattagtgtatgagtgattaagggttttggaa |
620 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49985359 |
acttttgttaaaaataacttgttttgaaattggggttttggaaaacggttgggtatgaattatttttgaattagtgcatgagtgattaagggttttggaa |
49985458 |
T |
|
| Q |
621 |
agaggttttaagcgctgaaagtttctttttcagttttggttttgtgaaacagtcagaggtagtagacacagattatgttgatagtgagacttcagattca |
720 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49985459 |
agaggttttaagcgctgaaagtttctttttcagttttggttttgtgaaacagtcagaggtagtagacacagattatgttgatagtgagacttcagattca |
49985558 |
T |
|
| Q |
721 |
gaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcgttaggccaaaaatctgttccctttgcttct |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| |||| |
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| T |
49985559 |
gaaaagtgaagttggttctaacgatgaatgtgtgactgcaaattttgtaggcattaggcccaaaatccgttccctttggttct |
49985641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 201 - 436
Target Start/End: Original strand, 49985040 - 49985276
Alignment:
| Q |
201 |
taaaaataaaaggtttgacttatcaaccaatatgacctgggcttgactcagacttaggtaggcccagccgcccacacgaaaagtataaataggacgcttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49985040 |
taaaaataaaaggtttgacttatcaaccaatatgacatgggcttgactcagacttatgtaggcccagccgcccacacgaaaagtataaataggacgcttg |
49985139 |
T |
|
| Q |
301 |
caattttaacggaaaatcaatccttgtattgtatcgcacacgaattcacattcagtcgcactttcatcgctggaatcaacttcaccttctttctgaacct |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49985140 |
caattttaacggaacatcaatccttgtattgtatcgcacacgaattcacattcagtcgcacgttcatcgctggaatcaacttcaccttctttctgaacct |
49985239 |
T |
|
| Q |
401 |
gtagtctcactatctctcgaactgaa-ttatcgactg |
436 |
Q |
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|||||||||||||||||| ||||||| |||||||||| |
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| T |
49985240 |
gtagtctcactatctctcaaactgaatttatcgactg |
49985276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 41929656 - 41929532
Alignment:
| Q |
11 |
agttacatgaagttacttctgaagttattcttttttgtttatttt------aaattaaaaatgaagttaaagtgagtaaattagagtaaccgttgagggt |
104 |
Q |
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|||||| ||||||||| | ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41929656 |
agttacgtgaagttacatatgaagttattcttttttgttttttttttttttaaaataaaaatgaagttaaagtgagtaaattagagtaaccattgagggt |
41929557 |
T |
|
| Q |
105 |
aattatggaagtaaattaggctaca |
129 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
41929556 |
aattatggaagtaaattaggctaca |
41929532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 49984669 - 49984710
Alignment:
| Q |
168 |
atttaaatattaaaagaagtatgactttagtaataaaaataa |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49984669 |
atttaaatattaaaagaagtatgactttagtaataaaaataa |
49984710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 9368313 - 9368155
Alignment:
| Q |
1 |
cccttgcatcagttacatgaagttacttctgaagttattcttttttgtttatttta---aattaaaaatgaagttaaagtgagtaaattagagtaaccgt |
97 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||| | |
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| T |
9368313 |
cccttgcaccagttacgtgaagttacttctgaagttattcttttttgttttttttttttaaataaaaatgaagttaaagtgagtaaattagagtaacctt |
9368214 |
T |
|
| Q |
98 |
tgagggtaattatggaagtaaattaggctacattaaaacaaaagtattgactttattaa |
156 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
9368213 |
tgagggtaattatgaaagtaaattaggctacaccgaaacaaaagtattgcctttattaa |
9368155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 22377537 - 22377697
Alignment:
| Q |
10 |
cagttacatgaagttacttctgaagttattcttttttgtttatttta-----------aattaaaaatgaagttaaa-gtgagtaaattagagtaaccgt |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||||||||| |
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| T |
22377537 |
cagttacatgaagttacttctgaagttattcttttttgttttttttgtttttttttttaaataaaaatgaagttaaaagtgagtaaattagagtaaccgt |
22377636 |
T |
|
| Q |
98 |
tgagggtaattatggaagtaaattaggctacattaaaacaaaagtattgactttattaata |
158 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
22377637 |
tgagggtaattatggaagtaaattatgctacaccaaaacaaaagtattgactttattaata |
22377697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 21116924 - 21116982
Alignment:
| Q |
100 |
agggtaattatggaagtaaattaggctacattaaaacaaaagtattgactttattaata |
158 |
Q |
| |
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|||||| || |||||| |||||||||||| ||||||||||||||| ||||||||||| |
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| T |
21116924 |
agggtatttttggaagctaattaggctacaccaaaacaaaagtattgcctttattaata |
21116982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 51094 - 51197
Alignment:
| Q |
30 |
tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc |
125 |
Q |
| |
|
||||||||||||||||| ||| ||||| | | ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
51094 |
tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc |
51193 |
T |
|
| Q |
126 |
taca |
129 |
Q |
| |
|
|||| |
|
|
| T |
51194 |
taca |
51197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 129
Target Start/End: Original strand, 60842 - 60945
Alignment:
| Q |
30 |
tgaagttattcttttttgtttattttaa-attaaaaatgaagttaaag---tgagtaaattagagtaaccgttgagggtaattatggaagtaaattaggc |
125 |
Q |
| |
|
||||||||||||||||| ||| ||||| | | ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
60842 |
tgaagttattctttttttttttttttattagttaaaatgaagttaaagcagtgagtaaattagagtaaccgttgagggtaaatgtggaagtaaattaggc |
60941 |
T |
|
| Q |
126 |
taca |
129 |
Q |
| |
|
|||| |
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|
| T |
60942 |
taca |
60945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 51339 - 51294
Alignment:
| Q |
84 |
attagagtaaccgttgagggtaattatggaagtaaattaggctaca |
129 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
51339 |
attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca |
51294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 61087 - 61042
Alignment:
| Q |
84 |
attagagtaaccgttgagggtaattatggaagtaaattaggctaca |
129 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
61087 |
attagagtaaccgttgagggtaaatgtggaagtaaattaggctaca |
61042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 80021 - 79980
Alignment:
| Q |
117 |
aaattaggctacattaaaacaaaagtattgactttattaata |
158 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
80021 |
aaattaggctacaccaaaacaaaagtattgcctttattaata |
79980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 23651619 - 23651578
Alignment:
| Q |
117 |
aaattaggctacattaaaacaaaagtattgactttattaata |
158 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
23651619 |
aaattaggctacaccaaaacaaaagtattgcctttattaata |
23651578 |
T |
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