View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_high_11 (Length: 209)
Name: NF21201_high_11
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 1407697 - 1407505
Alignment:
| Q |
12 |
atgaagaactagtacatgatacaacacaacaacactagtattaatttgagaaaatgaagttatttgaacgtaccaatcacatgtgtcgatgttcaacatg |
111 |
Q |
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| T |
1407697 |
atgaagaactagtacatgatacaacacaataacactagtattaatttgagaaaatgaagttatttgaatgtaccaatcacatgtgtcgatgttcaacatg |
1407598 |
T |
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| Q |
112 |
ttgatccatgtaattattcgtaacaaaacagaccttgtagtctatgttgtagtacaaagtggatgtatctacgcagagagaaatgaagtagag |
204 |
Q |
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| T |
1407597 |
ttgatccatgtaattattcgtaacgaaacggaccttgtagtctatgttgtagtacaaagtggatgtatctacgcagagagaaatgaagtagag |
1407505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 1396616 - 1396494
Alignment:
| Q |
81 |
gtaccaatcacatgtgtcgatgttcaacatgttgatccatgtaattattcgtaacaaaacagaccttgtagtctatgttgtagtacaaagtggatgtatc |
180 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1396616 |
gtaccaatcacatgtgtcgatgttcaacatgttgatc-atgtaattgttcgtaacgaaacagaccttgtagtctatgttatagtacaaagtggatgtatc |
1396518 |
T |
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| Q |
181 |
tacgcagagagaaatgaagtagag |
204 |
Q |
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| T |
1396517 |
tacgcagagagaaatgaagtagag |
1396494 |
T |
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