View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21201_high_5 (Length: 392)

Name: NF21201_high_5
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21201_high_5
NF21201_high_5
[»] chr7 (8 HSPs)
chr7 (38-385)||(7199742-7200089)
chr7 (179-240)||(3756376-3756438)
chr7 (188-238)||(10084622-10084672)
chr7 (188-233)||(9902174-9902220)
chr7 (179-240)||(33818959-33819021)
chr7 (179-240)||(41909365-41909426)
chr7 (188-216)||(31756888-31756916)
chr7 (179-243)||(46080898-46080962)
[»] chr8 (4 HSPs)
chr8 (179-276)||(22842149-22842249)
chr8 (188-238)||(38006564-38006615)
chr8 (178-240)||(33102110-33102173)
chr8 (179-240)||(12750156-12750218)
[»] chr5 (8 HSPs)
chr5 (179-240)||(37442613-37442674)
chr5 (179-239)||(9828181-9828241)
chr5 (179-240)||(32827080-32827141)
chr5 (179-316)||(32303609-32303748)
chr5 (183-243)||(9979677-9979738)
chr5 (188-239)||(34594666-34594717)
chr5 (179-229)||(15398371-15398421)
chr5 (188-240)||(8055165-8055218)
[»] chr4 (8 HSPs)
chr4 (200-316)||(30097447-30097564)
chr4 (179-240)||(959083-959144)
chr4 (179-240)||(52450178-52450240)
chr4 (188-242)||(1845833-1845888)
chr4 (188-238)||(24393619-24393670)
chr4 (179-222)||(37688820-37688863)
chr4 (179-240)||(8434238-8434299)
chr4 (188-240)||(33648209-33648262)
[»] chr3 (3 HSPs)
chr3 (179-297)||(36703049-36703169)
chr3 (188-239)||(20991562-20991614)
chr3 (189-240)||(35310435-35310487)
[»] chr2 (9 HSPs)
chr2 (179-240)||(39556023-39556084)
chr2 (179-236)||(43294660-43294717)
chr2 (179-300)||(13387318-13387441)
chr2 (179-240)||(17793874-17793935)
chr2 (179-240)||(33833456-33833517)
chr2 (188-240)||(8513961-8514013)
chr2 (188-240)||(6620013-6620066)
chr2 (188-216)||(8514054-8514082)
chr2 (252-300)||(39555931-39555979)
[»] chr6 (7 HSPs)
chr6 (179-246)||(23252889-23252957)
chr6 (188-240)||(2725849-2725902)
chr6 (183-240)||(30841112-30841169)
chr6 (179-240)||(2146731-2146792)
chr6 (179-233)||(3607063-3607117)
chr6 (179-240)||(17497609-17497670)
chr6 (188-240)||(20890415-20890467)
[»] scaffold0254 (1 HSPs)
scaffold0254 (179-240)||(23192-23253)
[»] chr1 (3 HSPs)
chr1 (179-239)||(14210605-14210664)
chr1 (188-240)||(21322574-21322627)
chr1 (192-236)||(29855941-29855986)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 38 - 385
Target Start/End: Complemental strand, 7200089 - 7199742
Alignment:
Q  38 tgcaatatgcatagaaaaaacaagtaagaacaaacaaatgcatatataggcgtgctaaaagtagtaggcatggtgtaacagaatatgggctccagcctca 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7200089 tgcaatatgcatagaaaaaacaagtaagaacaaacaaatgcatatataggcgtgctaaaagtagtaggcatggtgtaacagaatatgggctccagcctca 7199990  T
Q  138 aaatggcatatatcccacaaaagaagggatatacttttaactaattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagtta 237  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||    
T  7199989 aaatggcatatatcccacaaaagaagggatatacttttagctaattgtttttctcccatctgtttttgcttatttccgtcaaataatcgagcgtga-tta 7199891  T
Q  238 acttacataactattttttagcgtgcgttaactcacgtaggactg-gaatgaataaaaacagataggaaaaaagcaattcctgtgacggacttctaataa 336  Q
    |||||| ||||| |||||||||||| ||||||||| |||||||||  |||||| ||||| |||||||| |||||||||| | ||||||||||||||||||    
T  7199890 acttacgtaactgttttttagcgtgagttaactcatgtaggactgaaaatgaacaaaaatagataggagaaaagcaatttccgtgacggacttctaataa 7199791  T
Q  337 tatgatgtaagagtaaaattgatacttaacgaacatatgtttcatctca 385  Q
    |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  7199790 tatgacctaagagtaaaattgatacttaacgaacatatgtttcatctca 7199742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 3756376 - 3756438
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||    
T  3756376 taattgctcttctcccatttgtttttgctcattcccgtcaaaatagtcgagtgtgagttaact 3756438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 10084622 - 10084672
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaa 238  Q
    ||||| |||||||||||||||||| ||||||||||| | ||||||||||||    
T  10084622 ttctctcatctgtttttgctcattcccgtcaaatagccaagcgtgagttaa 10084672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 9902220 - 9902174
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtga 233  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  9902220 ttctcccatctgtttttgctcattcccgtcaaaataatcgagcgtga 9902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 33819021 - 33818959
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaa-tagtcgagcgtgagttaact 240  Q
    |||||| |||||| ||||||||||||||||||  |||||||| ||| ||| ||||||||||||    
T  33819021 taattgcttttcttccatctgtttttgctcatccccgtcaaagtaggcgaacgtgagttaact 33818959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 41909426 - 41909365
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||| ||||||||||| |||||| |||||||||| || ||||| ||||||||    
T  41909426 taattgctcttctctcatctgttttttctcattcccgtcaaataatcaagcgtaagttaact 41909365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 31756916 - 31756888
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgt 216  Q
    |||||||||||||||||||||||||||||    
T  31756916 ttctcccatctgtttttgctcatttccgt 31756888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 46080962 - 46080898
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaacttac 243  Q
    |||||| | ||||| ||||||||||||||||||||  ||| ||||  ||||| ||||||||||||    
T  46080962 taattgctcttctctcatctgtttttgctcatttctttcagatagcggagcgcgagttaacttac 46080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 22842149 - 22842249
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaacttacataa--ctattttttagcgtgcgttaactcacgt 275  Q
    |||||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| || |||   |||||||| || |||||||||||||||    
T  22842149 taattgttcttctcccatctgttttttctcattcccgtcaaaatagtcgagcgtgagttaactcacgtaaatgtatttttttgcatgcgttaactcacgt 22842248  T
Q  276 a 276  Q
    |    
T  22842249 a 22842249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 38006615 - 38006564
Alignment:
Q  188 ttctcccatctgtttttgctcatttccg-tcaaatagtcgagcgtgagttaa 238  Q
    |||||||||||||||||||||||| ||| | |||||||||||||||||||||    
T  38006615 ttctcccatctgtttttgctcattcccgttaaaatagtcgagcgtgagttaa 38006564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 33102173 - 33102110
Alignment:
Q  178 ctaattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    ||||||| | |||||  ||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  33102173 ctaattgctcttctcttatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaact 33102110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 12750156 - 12750218
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgt-caaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||||||||| |||||  |||| ||||||| ||||||||||||||||    
T  12750156 taattgctcttctcccatctgtttttcctcatccccgtccaaatagccgagcgtgagttaact 12750218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 37442674 - 37442613
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | |||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  37442674 taattgctcttcttccatctgtttttgctcattcccgtcaaatagccgagcgtgagttaact 37442613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 9828181 - 9828241
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaac 239  Q
    |||||| | |||||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  9828181 taattgctcttctcccatctggttttgctcattcccgtcaaatagtagagcgtgagttaac 9828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 32827141 - 32827080
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | |||||| |||| |||||||||||||||||||||||||||| | ||||||||||    
T  32827141 taattgctattctcctatctatttttgctcatttccgtcaaatagtcgaacatgagttaact 32827080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 32303609 - 32303748
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaa-tagtcgagcgtgagttaacttacataactat-tttttagcgtgcgttaactcacgta 276  Q
    |||||| | |||| ||||||| |||||||||||| ||||||| |||||||||||||||||||| ||  |  | | |||| |||||| |||||||||| ||    
T  32303609 taattgctcttcttccatctgattttgctcattttcgtcaaaatagtcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacata 32303708  T
Q  277 ggactggaatgaataaaaacagataggaaaaaagcaattc 316  Q
    |||| | |||||  |||||| ||| ||| || ||||||||    
T  32303709 ggacggaaatgagcaaaaacggatgggagaagagcaattc 32303748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 9979738 - 9979677
Alignment:
Q  183 tgtttttctcccatctgtttttgctcatttccgtcaaa-tagtcgagcgtgagttaacttac 243  Q
    |||| |||||||||||||||||| |||||   |||||| |||||||||||||||||||||||    
T  9979738 tgttcttctcccatctgtttttgttcattcatgtcaaaatagtcgagcgtgagttaacttac 9979677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 34594666 - 34594717
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaac 239  Q
    ||||||||||| ||||| |||||| |||| |||||| |||||||||||||||    
T  34594666 ttctcccatcttttttttctcattcccgttaaatagccgagcgtgagttaac 34594717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 15398421 - 15398371
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagc 229  Q
    |||||| | ||||||||||| |||||||||||| |||||||||| ||||||    
T  15398421 taattgctcttctcccatctatttttgctcattaccgtcaaataatcgagc 15398371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 8055165 - 8055218
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaaa-tagtcgagcgtgagttaact 240  Q
    |||||||||| |||||||||| || |||| ||| ||||||||||||||||||||    
T  8055165 ttctcccatcagtttttgctcgttcccgttaaaatagtcgagcgtgagttaact 8055218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 200 - 316
Target Start/End: Original strand, 30097447 - 30097564
Alignment:
Q  200 tttttgctcatttccgtcaaatagtcgagcgtgagttaacttacata-actattttttagcgtgcgttaactcacgtaggactggaatgaataaaaacag 298  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||  |   ||||||||| |||| |||||||||||||| |  | ||||| ||||| |||    
T  30097447 tttttgctcatttccatcaaatagtcgagcgtgagttaactcacgcagtgtattttttaacgtgggttaactcacgtagaatggaaatgagtaaaagcag 30097546  T
Q  299 ataggaaaaaagcaattc 316  Q
    || ||| || ||||||||    
T  30097547 atgggagaagagcaattc 30097564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 959083 - 959144
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||    
T  959083 taattgctcttctcccatctatttttgctcatttccgttaaataatcgagcgtcagttaact 959144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 52450240 - 52450178
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    |||||| ||| ||||||||||||||| |||||| ||||| |||||| ||||||||||||||||    
T  52450240 taattgctttcctcccatctgtttttactcattcccgtcaaaatagccgagcgtgagttaact 52450178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 1845833 - 1845888
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaa-atagtcgagcgtgagttaactta 242  Q
    |||||| |||||||||| |||||| ||||||| |||||| ||||||||||||||||    
T  1845833 ttctcctatctgttttttctcattcccgtcaatatagtcaagcgtgagttaactta 1845888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 24393619 - 24393670
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaa 238  Q
    |||||||||||||||||||||||| || || ||||||| |||||||||||||    
T  24393619 ttctcccatctgtttttgctcattcccatcaaaatagttgagcgtgagttaa 24393670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 37688820 - 37688863
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaata 222  Q
    |||||||| |||||||||||||||||| |||||||||| |||||    
T  37688820 taattgttcttctcccatctgtttttgttcatttccgttaaata 37688863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 8434299 - 8434238
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||| ||||| |||||||||||||| ||||||||  |||||||| |||||||    
T  8434299 taattgctcttctctcatctttttttgctcatttctgtcaaataaccgagcgtgcgttaact 8434238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 33648209 - 33648262
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    ||||||||| | |||||||||||| ||||| ||||||||||| |||||||||||    
T  33648209 ttctcccatatatttttgctcattcccgtcaaaatagtcgagtgtgagttaact 33648262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 297
Target Start/End: Complemental strand, 36703169 - 36703049
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaacttacata--actattttttagcgtgcgttaactcacgta 276  Q
    |||| ||| |||||||||||||||||| |||||||||| |||| |||||||||||||||| | || ||    |||| || ||||||  ||||||||||||    
T  36703169 taatcgttcttctcccatctgtttttgttcatttccgttaaattgtcgagcgtgagttaattcacgtaggtgtattcttcagcgtgaattaactcacgta 36703070  T
Q  277 ggactggaatgaataaaaaca 297  Q
    |||| |||||||  |||||||    
T  36703069 ggacgggaatgagcaaaaaca 36703049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 20991562 - 20991614
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaac 239  Q
    |||||||||||  ||||||||||| ||||| |||||| |||||||||||||||    
T  20991562 ttctcccatctaattttgctcattcccgtcaaaatagccgagcgtgagttaac 20991614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 35310487 - 35310435
Alignment:
Q  189 tctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    |||||||||| |||||||||||  ||||| |||||| ||||||||||||||||    
T  35310487 tctcccatctatttttgctcatccccgtcaaaatagccgagcgtgagttaact 35310435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 39556084 - 39556023
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||||||    
T  39556084 taattgcttttctcctatctgattttgctcattcccgtcaaatagtcgagtgtgagttaact 39556023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 43294717 - 43294660
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagtt 236  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||||| |||||||||||    
T  43294717 taattgttcttctctcatctgtttttactcatttccgtcaaatagttgagcgtgagtt 43294660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 13387318 - 13387441
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaacttacataactat-tttttagcgtgcgttaactcacgta 276  Q
    ||||||||||||||||||||||||||  ||||| ||||| |||||||| |||||||||||||| || ||  | | |||| | | || |||||||||||||    
T  13387318 taattgtttttctcccatctgtttttcttcattcccgtcaaaatagtcaagcgtgagttaactcacgtatgtgtattttcatcatgagttaactcacgta 13387417  T
Q  277 ggactggaatgaataaaaacagat 300  Q
    ||||  ||||||| ||||| ||||    
T  13387418 ggacgagaatgaacaaaaatagat 13387441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 17793874 - 17793935
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||||| |||| |||| |||||||  |||||||||| |||||||||||||| ||||||||    
T  17793874 taattgttcttcttccatatgtttttattcatttccgttaaatagtcgagcgtaagttaact 17793935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 33833517 - 33833456
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||||||||| |||||| | ||||||||| |||||||| |||||||    
T  33833517 taattgctcttctcccatctgtttttactcattcctgtcaaatagccgagcgtgggttaact 33833456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 8513961 - 8514013
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||||||||||||||| ||||| | |||||||| ||||| |||||||||||    
T  8513961 ttctcccatctgtttttgttcattcctgtcaaataatcgagtgtgagttaact 8514013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 6620013 - 6620066
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    ||||| ||| |||||||||||||| ||||| ||||||| |||||||||||||||    
T  6620013 ttctctcatttgtttttgctcattcccgtcaaaatagttgagcgtgagttaact 6620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 8514082 - 8514054
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgt 216  Q
    |||||||||||||||||||||||||||||    
T  8514082 ttctcccatctgtttttgctcatttccgt 8514054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 39555979 - 39555931
Alignment:
Q  252 tttttagcgtgcgttaactcacgtaggactggaatgaataaaaacagat 300  Q
    ||||||||||  |||||||||||||||||  ||||||| ||||||||||    
T  39555979 tttttagcgtaagttaactcacgtaggacatgaatgaacaaaaacagat 39555931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 23252957 - 23252889
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaacttacata 246  Q
    |||||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||| |||||    
T  23252957 taattgcttttctcccatctggttttgctcattcccgtcaaaatagccgagcgtgagttaactcacata 23252889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 2725902 - 2725849
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  2725902 ttctcccatctgtttttgctcattcccgtcaaaatagccgagcgtgagttaact 2725849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 30841112 - 30841169
Alignment:
Q  183 tgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||| |||||| |||||||||| ||||||||||||||||||||||| ||||| |||||    
T  30841112 tgttcttctcctatctgtttttactcatttccgtcaaatagtcgagtgtgagctaact 30841169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 2146731 - 2146792
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||| |||||||| |||||||||||||||  |||||||||| ||||    
T  2146731 taattgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtgagtgaact 2146792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 3607117 - 3607063
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtga 233  Q
    |||||| | ||||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  3607117 taattgctcttctcccatctatttttgctcattttcgtaaaatagttgagcgtga 3607063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 17497609 - 17497670
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||||||| |||||| || |||||||||| ||||| | ||||||||    
T  17497609 taattgctcttctcccatctgtttatgctcaatttcgtcaaatagccgagcataagttaact 17497670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 20890467 - 20890415
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    ||||||||| ||||||| ||||||  |||||||||||||||| ||| ||||||    
T  20890467 ttctcccatatgtttttcctcattctcgtcaaatagtcgagcatgaattaact 20890415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 23192 - 23253
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaact 240  Q
    |||||| | ||||||||||| |||||||| |||||||||||||||  |||||||||| ||||    
T  23192 taattgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtgagtgaact 23253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 14210605 - 14210664
Alignment:
Q  179 taattgtttttctcccatctgtttttgctcatttccgtcaaatagtcgagcgtgagttaac 239  Q
    |||||| | ||||||||||| |||| ||||||| |||||||||||||||| ||||||||||    
T  14210605 taattgatcttctcccatctatttt-gctcattcccgtcaaatagtcgagtgtgagttaac 14210664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 21322627 - 21322574
Alignment:
Q  188 ttctcccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagttaact 240  Q
    |||||||||||||||||||||| | ||||| |||||| |||| |||||||||||    
T  21322627 ttctcccatctgtttttgctcaatcccgtcaaaatagccgagggtgagttaact 21322574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 29855941 - 29855986
Alignment:
Q  192 cccatctgtttttgctcatttccgtc-aaatagtcgagcgtgagtt 236  Q
    |||||||||||||||||||| || || |||||||||||||||||||    
T  29855941 cccatctgtttttgctcattcccatcaaaatagtcgagcgtgagtt 29855986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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