View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_high_8 (Length: 239)
Name: NF21201_high_8
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 42820374 - 42820148
Alignment:
| Q |
1 |
tcataccttattactagttattaatactaaatattcactata------------tatatagtagtcttagtgaagaagcattaatattaggaaattgtgt |
88 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42820374 |
tcataccttagtactagttattaatactaaatattcactataaacacaattatatatatagtagtcttagtgaagaagcattaatattaggaaattgtgt |
42820275 |
T |
|
| Q |
89 |
taactaagagaagaaaatatcaaccataaacaattgaaggaacaaaaattggatgaaacagttttgatgtttattgaaactatagttagatttcgtatgt |
188 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42820274 |
taactaagagaagaaaatataaaccataaacaattgaaggaacaaaaattggatgaaacagttttgatgtttattgaaactatagttagatttcgtatgt |
42820175 |
T |
|
| Q |
189 |
atcactcataactgccactgccactgc |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
42820174 |
atcactcataactgccactgccactgc |
42820148 |
T |
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