View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_low_10 (Length: 222)
Name: NF21201_low_10
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 35452982 - 35453187
Alignment:
| Q |
18 |
actaacacgttgtaaattgatttccaaatgtattttgatggtgttaaactaaaagaaactggtcttcgaaagttatctatcaaatttttaga-------- |
109 |
Q |
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| T |
35452982 |
actaacacgttgtaaattgatttccaaatgtattttgatggtgttaaactaaaagaaactggtcttcgaaagttatctatcaaatttttagaggtgcttg |
35453081 |
T |
|
| Q |
110 |
-----cattgagggggccaaaaaagcaatactaaaagtatagtttaactttgaactcattaagcccaagtccatcgtaatattagaagcccagtcaatat |
204 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35453082 |
atagacattgagggggccaaaaaagcaatcctaaaagtatagtttaactttgaactcattaagcccaagtccatcgtaatattagaagcccagtcaatat |
35453181 |
T |
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| Q |
205 |
attctt |
210 |
Q |
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||||| |
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| T |
35453182 |
tttctt |
35453187 |
T |
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