View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_low_2 (Length: 648)
Name: NF21201_low_2
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 13 - 629
Target Start/End: Complemental strand, 41874447 - 41873830
Alignment:
| Q |
13 |
aaggtagatttgtgtttgattatcatgtgttttttgtttaaattaaagggtcatggggagaccaaaattagcaattttgcattacaaataacagttgaat |
112 |
Q |
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| T |
41874447 |
aaggtagatttgtgtttgattatcatttgttttttgtttaaattaaagggtcatggggataccaaaattagcaattttgcattacaaataacagttgaat |
41874348 |
T |
|
| Q |
113 |
tcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattagtannnnnnnaaaattaagttattgtttttggtag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
41874347 |
tcactatattttatcaccgtccacaatagttctatttttcactttaacagtacccttactcattactatttttttaaaattaagttattgtttttggtag |
41874248 |
T |
|
| Q |
213 |
aatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatataggtcattgagattgtgaatttttcaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41874247 |
aatgatgtagaggagtttggtgatgattaaataataaagcatcaaattagttatttatagagaatgttatataggtcattgagattgtgaatttttcaaa |
41874148 |
T |
|
| Q |
313 |
aatgtattgactcagttaaattgtaagttggtttcttatatttaaccacttatcatcatttacttctctatttctaaacaatttggtctttatttagcca |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41874147 |
aatgtattgactcagttaaattgtaagttggtttcttatatttaaccacttatcatcaattacttctctatttctaaacaatttggtctttatttagcca |
41874048 |
T |
|
| Q |
413 |
ttaataaaacaagcaataccatctcattttaagcatgacgtgagtcagagtgagagctcttcaagatcattttatgcggcccctaattgtaaatgtggta |
512 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41874047 |
ttaataaaacaagaaataccatctcattttaagcatgacgtgagtcagagtgagagctcttcaagatcattttatgcggcccctaattgtaaatgtggta |
41873948 |
T |
|
| Q |
513 |
tatcctc-aaatttaatgttacaaagacacacgagaatcctaataggcatttctatggatattcgtattttaaagtattccattttgttgtttatgctat |
611 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41873947 |
tatcctcaaaatttaatgttacaaagacacacgagaatcctaataggcatttctatggatattcgtattttaaagtattccattttgttgtttatgctat |
41873848 |
T |
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| Q |
612 |
caaatatactcatcatct |
629 |
Q |
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|||||||||||||||||| |
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| T |
41873847 |
caaatatactcatcatct |
41873830 |
T |
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