View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_low_3 (Length: 547)
Name: NF21201_low_3
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 527
Target Start/End: Complemental strand, 12673456 - 12672940
Alignment:
| Q |
9 |
gagtgagatgaaggtacaaatgaaattcgttcaaaaaggtccagcggtgcagcttgctgccgcttaccttctattcatgcgtaagaaatgcttgatatat |
108 |
Q |
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| T |
12673456 |
gagtgagaagaaggtacaaatgaaattcgtttaaaaaggtctagcggtgcagtttgctgccgcttaccttctattcatgcgtaagaaatacttgatatat |
12673357 |
T |
|
| Q |
109 |
ataatnnnnnnnntagtagtagtagtatttaattatggagttagcaagccaaggaattggggagggtgtgaatttgtaatatttgtttgaccatataaca |
208 |
Q |
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| T |
12673356 |
ataataaaaaaa--aatagtagtagtatttaattatggagttagcaagccaaggaattggggagggtgtgaatttgtaatatttgtttgaccatgtaaca |
12673259 |
T |
|
| Q |
209 |
ttgaagactgtgtgatggttggtagtaagatttcccatgagcatcatagttaaaaaatttaccctacnnnnnnnccacgagtatttagaagtatcaccta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12673258 |
ttgaagactgtgtgatggttggtagtaagatttcccatgagcatcatagttaaaaaatttaccctactttttttccacgagtatttagaagtatcaccta |
12673159 |
T |
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| Q |
309 |
tagtttagcatattttctttcggttaccaaagattccttgttcccttcacccatcattttgcgcaaattcacgttcttttgttccctcttttaaggggta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12673158 |
tagtttagcatattttctttcggttaccaaagattccttgttcccttcacccatcattttgcgcaaattcacgttcttttgttccctcttttaaggggta |
12673059 |
T |
|
| Q |
409 |
aactcattggtgtagcttcaattctaagtgagttcccatgtttacgtatactaccaagcagtgcaatccaagaaaaactacaacattataagatcttaaa |
508 |
Q |
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| T |
12673058 |
aactcattggtgtagcttcaattctaagtgagttcccatgtttacgtatactaccaagcagtgcaatccaagaaaaactacaacattataagatcttaaa |
12672959 |
T |
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| Q |
509 |
atcaatttcaggaatcatt |
527 |
Q |
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| T |
12672958 |
atcaatttcaggaatcatt |
12672940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 38815202 - 38815140
Alignment:
| Q |
51 |
agcggtgcagcttgctgcc-gcttaccttctattcatgcgtaagaaatgcttgatatatataa |
112 |
Q |
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| T |
38815202 |
agcggcgcagcttgttgcccgcttgccttctattcatgtgtaagcaatccttgatatatataa |
38815140 |
T |
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