View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21201_low_4 (Length: 448)
Name: NF21201_low_4
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_4 |
 | |
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| [»] chr8 (8 HSPs) |
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| [»] scaffold1444 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 424; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 17107419 - 17107866
Alignment:
| Q |
1 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
17107419 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgctattgg |
17107518 |
T |
|
| Q |
101 |
tggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17107519 |
tggcttctgatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcc |
17107618 |
T |
|
| Q |
201 |
tggaaccatccctatttgccattttgttggcaacaaggctattgcttgggtgcctgactcgtcttaaagtttgatatagggggaaatattttgtgcaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17107619 |
tggaaccatccctatttgccattttgttggcaacaaggctattgcttgggtgcctgactcgtcttaaagtttgatatagggggaaatattttgtgcaaat |
17107718 |
T |
|
| Q |
301 |
aacaaaccttatgtatagagtataatccatgtatttgaaataaatatagttcttaactaattagaactaatagtttggcacacattggtggcctaagtcc |
400 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17107719 |
aacaaaccttgtgtataaagtataatccatgtatttgaaataaatatagttcttaactaattagaactattagtttggcacacattggtggcctaagtcc |
17107818 |
T |
|
| Q |
401 |
aatgtaatgtatgttcgacttgataatgaacaaaaaagtttgtgtatt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17107819 |
aatgtaatgtatgttcgacttgataatgaacaaaaaagtttgtgtatt |
17107866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 17117411 - 17117161
Alignment:
| Q |
1 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattgg |
100 |
Q |
| |
|
||||||||||| || ||| |||||||| || ||||||||||| | || |||||| ||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
17117411 |
attggagacaacgcggtgttgtgtcatcgaatgaatttcaaaaatattatattttcttgtcaccaagttaatgcaacaacagtttacatggtgccattgg |
17117312 |
T |
|
| Q |
101 |
tggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||| ||| | |||||||||||||||| |
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|
| T |
17117311 |
tggcttctgatggaactaaagctaaggcagtgactatttgtcaccatgatacaagaggtatgaatcctgatcatctctataaggttctcaaagtcaagcc |
17117212 |
T |
|
| Q |
201 |
tggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
251 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
17117211 |
aggaactgtccctatttgccattttattggcaacaaggccattgcttgggt |
17117161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 17956494 - 17956247
Alignment:
| Q |
4 |
ggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattggtgg |
103 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| | | |||| |||||||||||||| ||||| |||||| ||||||||| ||||||||| |
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| T |
17956494 |
ggagacaacgcagtgatgtgccatagattgaattttaaaaaagttctattctattgccaccaagtcaatgcgacaacaacttacatggttccattggtgg |
17956395 |
T |
|
| Q |
104 |
cttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcctgg |
203 |
Q |
| |
|
| || |||||||| ||| ||||||||||||| || |||||||||||||| |||| ||| ||||| |||| ||||| || |||||||||| |||||||| |
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| T |
17956394 |
catccgatggaaccaaatctaaggcactaacaatctgtcaccatgatactcgaggtatggatcctaatgtgctttacgatgttctcaaagttaagcctgg |
17956295 |
T |
|
| Q |
204 |
aaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
251 |
Q |
| |
|
||| ||||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17956294 |
aactgtccctgtttgccattttattggcaacaaggccgttgcttgggt |
17956247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 17986659 - 17986409
Alignment:
| Q |
1 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||| | | |||||| | | | |||||||||||||||||||| ||||||||| || ||||| || | || | |
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|
| T |
17986659 |
attggagacaaagccgtgatgtgtcataaactaaatttcgatcaagttgtattttattgccaccaagtcaatgcaacatcaacatacatagttcctttag |
17986560 |
T |
|
| Q |
101 |
tggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcc |
200 |
Q |
| |
|
|||| || |||||||||||||| ||||||||||| || || |||||||| || ||||| ||| |||||||||| ||||||||| |||||||||||||||| |
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|
| T |
17986559 |
tggcctctgatggaactaaagcgaaggcactaacaatatgccaccatgacacgagaggtatggatcctgatgtgctttatgaagttctcaaagtcaagcc |
17986460 |
T |
|
| Q |
201 |
tggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
251 |
Q |
| |
|
|||||| || || || || ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
17986459 |
tggaacaattccaatatgtcattttgttagcaacaaggccattgcatgggt |
17986409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 17004237 - 17004394
Alignment:
| Q |
1 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattgg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||| | | ||||||||||| ||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
17004237 |
attggagacaaagtggtgatgtgtcatagattaaatttcaaaaatgttgtattttattgtcaccaagttaatgcaactacaacttacatggtgccattgg |
17004336 |
T |
|
| Q |
101 |
tggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagagg |
158 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
17004337 |
tggctttagatggaaccaaagctaaggcactaactgtctgccaccatgatacaagagg |
17004394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 4 - 251
Target Start/End: Complemental strand, 17945496 - 17945249
Alignment:
| Q |
4 |
ggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattggtgg |
103 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| | ||| | | | ||| ||||||||||| | || || ||||| ||||||||| ||||||||| |
|
|
| T |
17945496 |
ggagacaacgcagtgatgtgtcatagaatgaatcttaaaaaggttggattctattgccaccagatcaacgcgacaacgacttacatggttccattggtgg |
17945397 |
T |
|
| Q |
104 |
cttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcctgg |
203 |
Q |
| |
|
| || |||||||||||| | |||||||||||||| || ||||||||||||||||| ||| ||||| || | || |||||| ||||| ||||||||||||| |
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|
| T |
17945396 |
cctctgatggaactaaatccaaggcactaactatctgccaccatgatacaagaggtatggatcctaatatgctctatgaagttctccaagtcaagcctgg |
17945297 |
T |
|
| Q |
204 |
aaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
251 |
Q |
| |
|
||| ||||| |||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
17945296 |
aactgtccctgtttgccatttcattggcaacaaagctattgcctgggt |
17945249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 17999446 - 17999198
Alignment:
| Q |
1 |
attggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattgg |
100 |
Q |
| |
|
|||| |||||||| ||| ||||||||| || |||||||| | | | ||||||||||| |||||||| |||||| ||||| ||||||||| | ||| |
|
|
| T |
17999446 |
attgcagacaaaggagtaatgtgtcatcgaatgaatttcgagaaagttgtattttattgtcaccaagtgaatgcatcaacaacttacatggtccctttgt |
17999347 |
T |
|
| Q |
101 |
tggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcc |
200 |
Q |
| |
|
|||| || ||||||| ||||| ||| ||| | || |||||||||||| |||||||| |||||||| || | || ||||| |||||||||||||||| |
|
|
| T |
17999346 |
tggcctctgatggaagtaaagttaatgcattggctgcttgtcaccatgacacaagaggtatgaatccgaatttgctcgatgaagttctcaaagtcaagcc |
17999247 |
T |
|
| Q |
201 |
tggaaccatccctatttgccattttgttggcaacaaggctattgcttgg |
249 |
Q |
| |
|
||||| |||||| | |||||||||||||| ||||||||| |||||||| |
|
|
| T |
17999246 |
aggaactatccctgtctgccattttgttggtaacaaggctgttgcttgg |
17999198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 448
Target Start/End: Complemental strand, 17116995 - 17116807
Alignment:
| Q |
267 |
aagtttgatatagggggaaatattttgtgcaaataacaaaccttatgtatagagtataatccatgtatttgaaataaatatagttcttaac--taattag |
364 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| |||||||||| |||| |||||||| ||||||||||||||||||||||| || ||| ||||||| |
|
|
| T |
17116995 |
aagtgtgatataggggaaaatataacgtgcaaatatcaaaccttatatataaagtataattcatgtatttgaaataaatatagtgctaaactataattag |
17116896 |
T |
|
| Q |
365 |
aactaatagt-----ttggcacacattggtggcctaagtccaatgtaatgtatgttcgacttgataatgaacaaaaaagtttgtgtatt |
448 |
Q |
| |
|
||||| | || || | ||| ||||| || | ||||||||||||||||||| |||| ||||||||| ||||| || |||||||| |
|
|
| T |
17116895 |
aactattggtgtgtctttgtgcactttggtatcccatgtccaatgtaatgtatgtttgactagataatgaataaaaatgtatgtgtatt |
17116807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 17258256 - 17258018
Alignment:
| Q |
2 |
ttggagacaaagcagtgatgtgtcatagattgaatttcaaagacatggtattttattgccaccaagttaatgcaacaacagtttacatggtgtcattggt |
101 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| || | | ||||| ||||||||||||| | |||||||| | ||| |||| |||||||| |
|
|
| T |
17258256 |
ttggagacaatgcagtgatgtgtcatagattgaatttcgaaaaagttgtattcaattgccaccaagtgcaagcaacaactgcttatgtggtatcattggt |
17258157 |
T |
|
| Q |
102 |
ggcttcagatggaactaaagctaaggcactaactatttgtcaccatgatacaagaggaatgaatcctgatgttctttatgaacttctcaaagtcaagcct |
201 |
Q |
| |
|
|| | |||||| |||||||||||| ||||| |||| |||||||| |||||||| |||||| |||| | ||||||||| ||| |||||| | ||| |
|
|
| T |
17258156 |
agcccccgatggaggtaaagctaaggccttaactgtttgccaccatgacacaagaggcatgaatgctgagttgctttatgaagctctaaaagtcgaacct |
17258057 |
T |
|
| Q |
202 |
ggaaccatccctatttgccattttgttggcaacaaggct |
240 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
17258056 |
ggtaccatcccaatttgccatttcattggcaataaggct |
17258018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1444 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold1444
Description:
Target: scaffold1444; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 3 - 90
Alignment:
| Q |
164 |
atcctgatgttctttatgaacttctcaaagtcaagcctggaaccatccctatttgccattttgttggcaacaaggctattgcttgggt |
251 |
Q |
| |
|
|||||||||| || || ||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
3 |
atcctgatgtgctctacgaaattctcaaagtcaagcctggaactgtccctatttgccattttgttggtaacaaggccattgcttgggt |
90 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 35
Target Start/End: Original strand, 34241423 - 34241456
Alignment:
| Q |
2 |
ttggagacaaagcagtgatgtgtcatagattgaa |
35 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
34241423 |
ttggagacaaagcagtgatgtgtcataggttgaa |
34241456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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