View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_low_6 (Length: 383)
Name: NF21201_low_6
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 5946934 - 5947132
Alignment:
| Q |
13 |
cagacggtaaataattaaagtttggaagatgctaacctgaaaatggttgaaggacaagttgggtagaagattggcttgaattaaagacataacggtgccg |
112 |
Q |
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| T |
5946934 |
cagacggtaaataattaaagtttggaagatgctaacctgaaaatggttgaaggacaagttgggtagaagattggcttgaattaaagacataacggtgccg |
5947033 |
T |
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| Q |
113 |
ttttgcagaagttcaaacgtcgtccggagagggagaagaactgagaagctcgctcaactcatctgttctacctctactgctacactacctcccttatca |
211 |
Q |
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| T |
5947034 |
ttttgcagaagttcaaacgtcgtccggagagggagaagaactcagaagctcgctcaactcatctgttctacctctattgctacactacctcccttatca |
5947132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 5947161 - 5947219
Alignment:
| Q |
240 |
aaaatgcttaatatgttttaattaatgtctaaatgtttgaataaattttagcgtgtttg |
298 |
Q |
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| T |
5947161 |
aaaatgcttaatatgttttaattaatgtctaaatgtttgaataaattttagtgtgtttg |
5947219 |
T |
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