View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21201_low_8 (Length: 275)
Name: NF21201_low_8
Description: NF21201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21201_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 38111381 - 38111126
Alignment:
| Q |
6 |
gtccaagaatatattttttaaattatttttattaatctataattgataattatcactgttatcaagtattttcaaagtttagattatatgaagaaaaaat |
105 |
Q |
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| T |
38111381 |
gtccaaaaatatattttttaaattatttttattaatctataattgataattatcactgttatcaagtattttcaaagttta-attatatgaagaaaaaat |
38111283 |
T |
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| Q |
106 |
tcctaacatattcaatttaat----ggttctgtttttcctacaagacatcatttgcaaaatagtcttcattggtcttaataactatgcaaacgaaattct |
201 |
Q |
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| T |
38111282 |
tcctaacatattcaatttaatatatggttctgtttttcctacaagacatcatttgcaaaatagtcttcattggtcttaataactatgcaaacgaaattct |
38111183 |
T |
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| Q |
202 |
gaacaagtttcagactgcaatatattgctaccaagtaaacatccataaatctcatct |
258 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38111182 |
gaacaagtctcagactgcaatatattgctaccaagtaaacatccataaatctcatct |
38111126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 11203976 - 11203921
Alignment:
| Q |
160 |
aatagtcttcattggtcttaataactatgcaaacgaaattctgaacaagtttcaga |
215 |
Q |
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| T |
11203976 |
aatagtctttattggttttaataagtatgcaaaagaaattctgaaaaagtctcaga |
11203921 |
T |
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