View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21202_high_1 (Length: 618)
Name: NF21202_high_1
Description: NF21202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21202_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 4174031 - 4174633
Alignment:
| Q |
18 |
aaaatatttataatgaaattgagactattacaaataatgttgatgcatttaatnnnnnnnttaactcaaatgaattatttcaaacataaaaacaactat- |
116 |
Q |
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| T |
4174031 |
aaaatatttataatgaaattgagactattacaaataatgctgatgcatttaataaaaaaattaactcaaatgaattatttcaaacataaaaacaactatg |
4174130 |
T |
|
| Q |
117 |
---------------------acccttaactatttttcctgactctgtccttgacaatattgtttttaacataacacaccagtgggttctccgactgcga |
195 |
Q |
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| T |
4174131 |
tatatgtgtaaaattttcgccacccttaactatttttcctgactctgtccctgacaatattgtttctaacataacacaccagtgggttgtccgactgcga |
4174230 |
T |
|
| Q |
196 |
aatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174231 |
aatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaaccatctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtca |
4174330 |
T |
|
| Q |
296 |
tcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaag |
395 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4174331 |
tcagagttaatggctgcagcaagctttttagcaagaacgactgcatcctctagagcacaacatgctccttgcccaatatttggagtcattgggtgccaag |
4174430 |
T |
|
| Q |
396 |
cgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagactatagtctcatccgg |
495 |
Q |
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| T |
4174431 |
cgtctccaacgagtacaactctacctctagaaacaggtggacttatccatggccaaagccatcgatccatcaacggagtcaagactatagtgtcatccgg |
4174530 |
T |
|
| Q |
496 |
cgtagaatccattatgtttagtagctctggaggccagttttctactagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctacc |
595 |
Q |
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| T |
4174531 |
cgtagaatccattatgtttagtagctctggaagccagttttctacaagatccttagcttgcttctttagcaccgatggctcggttgttttaggacctacc |
4174630 |
T |
|
| Q |
596 |
att |
598 |
Q |
| |
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||| |
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| T |
4174631 |
att |
4174633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 147 - 598
Target Start/End: Original strand, 4170187 - 4170635
Alignment:
| Q |
147 |
tgacaatattgtttttaacataacacaccagtgggttctccgactgcgaaatcgaacccacaaggtttgccagtatggttagtggaaatatgcgcaacca |
246 |
Q |
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||||||||||||| ||||| |||||||||| ||||| ||| ||||| || |||||||||||| |||||| ||||||||||||||||||||||| ||| |
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| T |
4170187 |
tgacaatattgttcctaacagaacacaccagcgggttatcccactgcaaagccgaacccacaagatttgcccgtatggttagtggaaatatgcgcggcca |
4170286 |
T |
|
| Q |
247 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagtgtcgtcatcagagttgatggttgcagcaagctttttagcaagaacgactgcatcctct |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||| | || | |||||||||||||||||||||||| ||||||||||| |
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| T |
4170287 |
tctttcattgccatatgatctaaaagcgtcttcgatagaagagtc---atcagaatcaattgctgcagcaagctttttagcaagaaccactgcatcctca |
4170383 |
T |
|
| Q |
347 |
agagcacaacatgctccttgcccaatatttggagtcattgggtgccaagcgtctccaacgagtacaactctacctctagaaacaggtggacttatccatg |
446 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | ||| |
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| T |
4170384 |
agagcacaacaagctccttgcccaagatttggagtcattgggtgccaagcatcaccaacgagtacaactctacctgcagaaacaggtggacttgttgatg |
4170483 |
T |
|
| Q |
447 |
gccaaagccatcgatccatcaacggagtcaagactatagtctcatccggcgtagaatccattatgtttagtagctctggaggccagttttctactagatc |
546 |
Q |
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|||||||||||||||||| |||||||||| || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4170484 |
gccaaagccatcgatccaccaacggagtcctgattatagtgtcatccggtgtagaatccattatgtttagtagctctggaggccagttttccactagatc |
4170583 |
T |
|
| Q |
547 |
cttagcttgcttctttagcaccgatggctcggttgttttaggacctaccatt |
598 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
4170584 |
cttagcttgcttctttagcaccgatggctcagttgttttaggacctgccatt |
4170635 |
T |
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