View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21202_high_2 (Length: 524)
Name: NF21202_high_2
Description: NF21202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21202_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 12 - 508
Target Start/End: Original strand, 37677033 - 37677530
Alignment:
| Q |
12 |
tcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgacactcttcaggtttttatgcttttcttaatcttactt-cat |
110 |
Q |
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| T |
37677033 |
tcatcaacgatatttgaaactcctccaactagtgatgaagaacgagccaagttgattgacactcttcaggtttttatgcttttcttaatcttactttcat |
37677132 |
T |
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| Q |
111 |
ttctatatatttatcatgactaggccactatacactcacaaagcggacacgacattgacacgatcggacactaacatgtgtttgacatcagaaacgcctt |
210 |
Q |
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| T |
37677133 |
ttctatatatttatcatgactaggccactatacactcacaaagaggacacggcattgacaccatcggacactaacatgtgtttgacatcagacacgcctt |
37677232 |
T |
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| Q |
211 |
atatatgaagtgttagtgctacatagcttggaaactactatcagaacggagattgtgtagtaatttaataattaggagttaggagcttcactatttagta |
310 |
Q |
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| T |
37677233 |
atatatgaagtgttagtgctacatagtttggaagctactatcagaacggagattgtgtagtaatttaataattaggagttaggagcttcactatttagta |
37677332 |
T |
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| Q |
311 |
accatgtttcctattgttcataggatgagacggattagaaattatgcagatcatttaatcgactaaacttgctctggttactatttatttagaggggaaa |
410 |
Q |
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| T |
37677333 |
accatgtttcctattgttcataggatgagacggattagaaattatgcagatcatttaatcgactaaacttgctctggttactatttatttagaggggaaa |
37677432 |
T |
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| Q |
411 |
acttggacatgaaattgttctgcccctttagaatgaaactgacattcattacgattataatttccttgtttggctatttaatttgcaaattcaagatt |
508 |
Q |
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| T |
37677433 |
acttggacatgaaattgttctgcccctttagaatgaaactgacattcattacgattataatttccttgtttggctatttaatttgcaaattcaagatt |
37677530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 16742931 - 16742993
Alignment:
| Q |
174 |
tcggacactaacatgtgtttgacatcagaaacgccttatatatgaagtgttagtgctacatag |
236 |
Q |
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| T |
16742931 |
tcggacactaacacgggttggacatcagacacaccttcgatatgaagtgttggtgctacatag |
16742993 |
T |
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