View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21202_high_5 (Length: 411)

Name: NF21202_high_5
Description: NF21202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21202_high_5
NF21202_high_5
[»] chr8 (16 HSPs)
chr8 (18-401)||(6371010-6371393)
chr8 (299-401)||(6333171-6333273)
chr8 (299-401)||(6275743-6275845)
chr8 (308-401)||(6425286-6425379)
chr8 (299-405)||(6322604-6322710)
chr8 (308-401)||(6353596-6353689)
chr8 (261-401)||(6392045-6392185)
chr8 (299-397)||(6264918-6265016)
chr8 (308-401)||(6290504-6290597)
chr8 (308-401)||(7460668-7460761)
chr8 (266-401)||(6411214-6411349)
chr8 (308-401)||(6364469-6364562)
chr8 (18-109)||(6353357-6353447)
chr8 (316-405)||(6452174-6452263)
chr8 (311-405)||(6458262-6458356)
chr8 (69-112)||(6364182-6364225)
[»] chr2 (1 HSPs)
chr2 (314-405)||(42694394-42694485)
[»] chr4 (1 HSPs)
chr4 (297-352)||(35412527-35412582)


Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 6371010 - 6371393
Alignment:
Q  18 ctgttcatatttatgataacaaaattatgtttcagcaacaatactaaaatctttagaatcataagtagagtaaacatttggatcaaccaaaagacatgtt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6371010 ctgttcatatttatgataacaaaattatgtttcagcaacaatactaaaatctttagaatcataagtagagtaaacatttggatcaaccacaagacatgtt 6371109  T
Q  118 tgaacgactattattttgagacacaggcactacaaaaatagaggactacacacgaatatttgtagccttacctttcttacttgcttctctaccagatctt 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  6371110 tgaaagactattattttgagacacaggcactacaaaaatagaggactacacacaaatatttgtagccttacctttcttacttggttctctaccagatctt 6371209  T
Q  218 acccttcgagggtaaggaaaaccgtctgatcccttcaaagtgcttgaacccccaagaactggacgacccaagccagcctctttgtctggttcacccaaat 317  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6371210 acccttcgagggtaaggaaaaccgtctgatccctccaaagtgcttgatcccccaagaactggacgacccaagccagcctctttgtctggttcacccaaat 6371309  T
Q  318 cattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6371310 cattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttccatctcctcttaaagtcttcaactcttctt 6371393  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 299 - 401
Target Start/End: Original strand, 6333171 - 6333273
Alignment:
Q  299 ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactctt 398  Q
    ||||| || |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  6333171 ttgtcaggatcacccaagtcattgtaaacatcgtagtcatagatcctatccgattctttgcgctcacccgttccatctcctcttaaagtcttcaattctt 6333270  T
Q  399 ctt 401  Q
    |||    
T  6333271 ctt 6333273  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 299 - 401
Target Start/End: Original strand, 6275743 - 6275845
Alignment:
Q  299 ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactctt 398  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||| ||||||||||||||| ||||||||||    
T  6275743 ttgtcaggatcacccacatcattgtagacatcgtagtcatagatcctttcccattctttacgctctcctgttccatctcctcttaaagtgttcaactctt 6275842  T
Q  399 ctt 401  Q
    |||    
T  6275843 ctt 6275845  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 6425286 - 6425379
Alignment:
Q  308 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||  ||| |||||||||||||||||||||||||||||    
T  6425286 tcacccaaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaagtcttcaactcttctt 6425379  T

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Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 299 - 405
Target Start/End: Original strand, 6322604 - 6322710
Alignment:
Q  299 ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactctt 398  Q
    ||||| || |||||||| |||||||| ||||||||||||||||| |||||   ||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  6322604 ttgtcaggatcacccaagtcattgtaaacatcgtagtcatagattctatcgtgttccttgcgctgacccgttccatctcctcttaaagtcttcaattctt 6322703  T
Q  399 cttctct 405  Q
    |||||||    
T  6322704 cttctct 6322710  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 6353596 - 6353689
Alignment:
Q  308 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    |||||||||||||||||||||||||| ||||| || || |||||||| |||||||| || |||| ||||||||||||||||||||| |||||||    
T  6353596 tcacccaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt 6353689  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 261 - 401
Target Start/End: Original strand, 6392045 - 6392185
Alignment:
Q  261 ttgaacccccaagaactggacgacccaagccagcctctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcg 360  Q
    |||| ||||||||||||||||||  ||||| ||  | || |||||||| ||||||||||||||||||||| || ||||| || || |||||||| || ||    
T  6392045 ttgatcccccaagaactggacgatacaagcaaggattttggtctggttgacccaaatcattgtagacatcataatcatatattctgtcccattccttacg 6392144  T
Q  361 ctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    ||| || |||| ||||||||||||||| ||||| |||||||    
T  6392145 ctctccagttccatctcctcttaaagtattcaattcttctt 6392185  T

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Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 397
Target Start/End: Original strand, 6264918 - 6265016
Alignment:
Q  299 ttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactct 397  Q
    ||||| || ||||||||||||||||| ||||| || ||||| |  || ||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  6264918 ttgtcggggtcacccaaatcattgtaaacatcataatcataaactctgtcccattctttgcgctcccccgttccatctcctcttaaagtcttcaactct 6265016  T

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Target: chr8; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 6290504 - 6290597
Alignment:
Q  308 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    ||||| |||||||||||||||||||| ||||| || || |||||||| |||||||| || |||| ||||||||||||||||||||| |||||||    
T  6290504 tcacctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttctt 6290597  T

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Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 7460668 - 7460761
Alignment:
Q  308 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    |||||||| |||||||||||||| || ||||| || || |||||||| |||||||| ||||||| ||||||||||||||||||||| |||||||    
T  7460668 tcacccaagtcattgtagacatcataatcatatattctgtcccattccttgcgctctcccgttccatctcctcttaaagtcttcaattcttctt 7460761  T

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Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 266 - 401
Target Start/End: Original strand, 6411214 - 6411349
Alignment:
Q  266 cccccaagaactggacgacccaagccagcctctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcac 365  Q
    ||||||||||||||||||  ||||| ||    || |||||||| ||||||||||||||||||||| || ||||| || || |||||| | || ||||| |    
T  6411214 cccccaagaactggacgatacaagcaaggactttcgtctggttgacccaaatcattgtagacatcataatcatatattctgtcccataccttacgctctc 6411313  T
Q  366 ccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    | |||| ||||||||||||||||||||| |||||||    
T  6411314 cagttccatctcctcttaaagtcttcaattcttctt 6411349  T

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Target: chr8; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 308 - 401
Target Start/End: Original strand, 6364469 - 6364562
Alignment:
Q  308 tcacccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttctt 401  Q
    ||||||||||||||||||||||| || ||||| || || |||||||| || ||||| || |||| ||||||||||||||||||||| |||||||    
T  6364469 tcacccaaatcattgtagacatcataatcatatattctttcccattccttacgctctccagttccatctcctcttaaagtcttcaattcttctt 6364562  T

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Target: chr8; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 6353357 - 6353447
Alignment:
Q  18 ctgttcatatttatgataacaaaattatgtttcagcaacaatactaaaatctttagaatcataagtagagtaaacatttggatcaaccaaaa 109  Q
    ||||||| || ||| ||||||| || |||||| || |||||||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  6353357 ctgttcaaatatataataacaatat-atgttttagaaacaataccaaaatctttagaatcataagcagggtaaacatttggatcaaccaaaa 6353447  T

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Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 6452174 - 6452263
Alignment:
Q  316 atcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttcttctct 405  Q
    |||||| || ||||| || || || |||||||||||||||||||| || || |||| ||||||||||| | ||| |||||||||||||||    
T  6452174 atcattataaacatcataatcgtatatcctatcccattctttgcgttctccggttccatctcctcttagattctgcaactcttcttctct 6452263  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 405
Target Start/End: Original strand, 6458262 - 6458356
Alignment:
Q  311 cccaaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttcttctct 405  Q
    ||||||||||| || | ||| || ||||| |  ||||||  |||||||||||| || |||| ||||||||||| ||||| |||||||||||||||    
T  6458262 cccaaatcattataaatatcataatcataaactctatccgcttctttgcgctctccagttccatctcctcttagagtctgcaactcttcttctct 6458356  T

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Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 6364182 - 6364225
Alignment:
Q  69 tttagaatcataagtagagtaaacatttggatcaaccaaaagac 112  Q
    |||||||||||||| |||||||||||||| |||||| |||||||    
T  6364182 tttagaatcataagcagagtaaacatttgtatcaacaaaaagac 6364225  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 314 - 405
Target Start/End: Original strand, 42694394 - 42694485
Alignment:
Q  314 aaatcattgtagacatcgtagtcatagatcctatcccattctttgcgctcacccgttcgatctcctcttaaagtcttcaactcttcttctct 405  Q
    ||||||||||||||||| || |||||||| || |||||||||||||| || || |||| ||||||||||||| | ||||| |||||||||||    
T  42694394 aaatcattgtagacatcataatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctct 42694485  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 35412527 - 35412582
Alignment:
Q  297 ctttgtctggttcacccaaatcattgtagacatcgtagtcatagatcctatcccat 352  Q
    |||||||||| ||||| ||||||||||| |||||||| ||||| ||||| ||||||    
T  35412527 ctttgtctggatcacctaaatcattgtacacatcgtactcataaatcctgtcccat 35412582  T

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