View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21202_high_9 (Length: 242)
Name: NF21202_high_9
Description: NF21202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21202_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 7410550 - 7410325
Alignment:
| Q |
2 |
gtgagaagaaattgtaatcaaaggacttaccacagtaaaaggtggaaaaataaaaataccgtgactcttcgtgaaagcaacataaagcaacgtctcccat |
101 |
Q |
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| T |
7410550 |
gtgaaaagaaattgtaatcaaaggacttaccacagtaaaaggtggaaaaataaaaataccgtgactcttcgtgaaagcaacataaagcaacgtctcccat |
7410451 |
T |
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| Q |
102 |
aaatattgcttaaaatacatcaagtggttataaaattaaaagattaaagattagcctgaagaaatctattgtcatgtttaagtggcatcttcaagtgtgc |
201 |
Q |
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| T |
7410450 |
aaatattgcttaaaatacatcaagtggttataaaatt-aaagattaaagattagcctgaagaaatctattgtcatgtttaagtggcatcttcaagtgtgc |
7410352 |
T |
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| Q |
202 |
tagcttcttcgtttgaaaatgataagt |
228 |
Q |
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||||||||||||| ||||||||||||| |
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| T |
7410351 |
tagcttcttcgttcgaaaatgataagt |
7410325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 204
Target Start/End: Original strand, 7410667 - 7410770
Alignment:
| Q |
93 |
gtctcccataaatattgcttaaaatacatcaagtggttataaaattaaaagattaaagattagcctgaagaaatctattgtcatgtttaagtggcatctt |
192 |
Q |
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|||||||||||||||| | ||||||| ||||||| ||||||| ||||||| | |||||||||||||| | ||||||||||| ||| | |||| |
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| T |
7410667 |
gtctcccataaatatttatgaaaatacttcaagtgattataaa--------attaaagttgagcctgaagaaatccactgtcatgtttaggtgccctctt |
7410758 |
T |
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| Q |
193 |
caagtgtgctag |
204 |
Q |
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||| |||||||| |
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| T |
7410759 |
caaatgtgctag |
7410770 |
T |
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