View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21202_low_13 (Length: 206)
Name: NF21202_low_13
Description: NF21202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21202_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 44038684 - 44038751
Alignment:
| Q |
62 |
atttctctgagctggtgagagtttgaaaaatttatgttgttgttgagagtttgaaaagggaagaagag |
129 |
Q |
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| T |
44038684 |
atttctctgagctggtgagagtttgaaaaatttatgttgttgttgagagtttgaaaagggaagaagag |
44038751 |
T |
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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 21262346 - 21262250
Alignment:
| Q |
62 |
atttctctgagctggtgagagtttgaaaaa--tttatgttgttgttgagagtttgaaaagggaagaagaggctggctgggaataagagaagaagaaa |
156 |
Q |
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| T |
21262346 |
atttctctgagctgctgagagtttgaaaaaaatttatattattcttgagagtttgaaaagagaagaagaggctcgctgggaagaagagaagaagaaa |
21262250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 21383509 - 21383605
Alignment:
| Q |
62 |
atttctctgagctggtgagagtttgaaaaa--tttatgttgttgttgagagtttgaaaagggaagaagaggctggctgggaataagagaagaagaaa |
156 |
Q |
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| T |
21383509 |
atttctctgagctgctgagagtttgaaaaaaatttatattattcttgagagtttgaaaagagaagaagaggctcgctgggaagaagagaagaagaaa |
21383605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 1996746 - 1996842
Alignment:
| Q |
62 |
atttctctgagctggtgagagtttgaaaaa--tttatgttgttgttgagagtttgaaaagggaagaagaggctggctgggaataagagaagaagaaa |
156 |
Q |
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| T |
1996746 |
atttctctgagctgctgagagtttgaaaaaaatttatattattcttgagagtttgaaaagagaagaagaggctcgctgggaagaagagaagaagaaa |
1996842 |
T |
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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 48029933 - 48029996
Alignment:
| Q |
62 |
atttctctgagctggtgagagtttgaaaaatttatgttgttgttgagagtttgaaaagggaaga |
125 |
Q |
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| T |
48029933 |
atttctctgggttggcgagagtttgaaaaatttatgttgttgttgagagtttgaaaagggaaga |
48029996 |
T |
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