View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21203_high_2 (Length: 509)
Name: NF21203_high_2
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21203_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 495
Target Start/End: Original strand, 43533672 - 43534149
Alignment:
| Q |
14 |
agacaaacaaagtgctggcgccatgtattgtagcgaaaagtatcatagcagttccaatccatgtatgatacttaactgaagcttcaaattgaataccaaa |
113 |
Q |
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| T |
43533672 |
agacaaacaaagtgctggcgccatgtattgtagcgaaaagtatcatagcagttccaatccatgtatgatacttaactgaagcttcaaattgaataccaaa |
43533771 |
T |
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| Q |
114 |
tatgcgaaatatagccaaccctcttaaaattggaagaagaagcaaagtcaaacaagcttctgctagcaaaccaaaccttgttgctattctaagagactta |
213 |
Q |
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| T |
43533772 |
tatgcgaaatatagccaaccctcttaaaattggaagaagaagcaaagccaaacaagcttctgctagcaaaccaaaccttgttgctattctaagagactta |
43533871 |
T |
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| Q |
214 |
agttgccatctgaaaattaagttatgttgcatgcatgcaattagtgaaataacagcttttcaatcatcaaacataaataatatcttgatcaaagaacact |
313 |
Q |
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| T |
43533872 |
agttgccatctgaaaattaagttatgttgca----tgcaattagtgaaataacagcttttcaatcatcaaacataaataatatcttgatcaaagaacact |
43533967 |
T |
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| Q |
314 |
tacatgttcagtttcagtgatttgtcttgcatcaactttttgaaatcattggaaatacgtgcatagtaagtccatgccaagaagactataaaaagaaaaa |
413 |
Q |
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| T |
43533968 |
tacatgttcagtttcagtgatttgtcttgcatcaactttttgaaatcattggaaatacgtgcatagtaagtccatgccaagaagactataaaaagaaaaa |
43534067 |
T |
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| Q |
414 |
ctaccagtatttcaatactggataggattccaactacactgttcaccactagtggatttgagaagacaattgatgaacttga |
495 |
Q |
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| T |
43534068 |
ctaccagtatttcaatactggataggattccaactacactgttcaccactagtggatttgagaagacaattgatgaacttga |
43534149 |
T |
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