View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21203_low_1 (Length: 647)
Name: NF21203_low_1
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21203_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 11 - 628
Target Start/End: Complemental strand, 54142253 - 54141644
Alignment:
| Q |
11 |
catcatcatgtcttcagtggtcaactattaaccagctgaacaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacctaaggcataa |
110 |
Q |
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| T |
54142253 |
catcatcatgtcttcagtgatcaactattaaccagctgaacaaaatatgtcaaatgacattccaactcacgataggaaccaggtactacctaaggcataa |
54142154 |
T |
|
| Q |
111 |
ttaaccagtaatctcccacagaaagattccagccggataagnnnnnnnncattgaattggagtgaannnnnnnataacactatcatatttagcctaggat |
210 |
Q |
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| T |
54142153 |
ttaaccagtaatctcccacagaaagattccagccggataagaaaaaaa-cattgaattggagtgaatttttttataacactatcatatttagcctaggat |
54142055 |
T |
|
| Q |
211 |
ccacttctcagcttcagattataaacaatttaatcaaactttcaagtgtagactttcattatcaactataactcggttttaccaggctcctattatgtga |
310 |
Q |
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| T |
54142054 |
ccacttctcagcttcagattataaacaatttaatcaaactttcaagtgtagactttcattatcaactataactcggttttaccaggctcctattatgtga |
54141955 |
T |
|
| Q |
311 |
tagttaattatgttacagtagtattatacttgcctcataggtatctagtgtatacctaaccaatcaagaaatattcaaacaaagaattgatgcactatgg |
410 |
Q |
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| T |
54141954 |
tagttaattatgttacagtagtattatacttgcctcataggtatctagtgtatacctaaccaatcaagaaacattcaaacaaagaattgatgcactatgg |
54141855 |
T |
|
| Q |
411 |
aggataaactgcagcaataaccattgactaaattaacagctgataagcacaagaaacaagaacgtgtatgtgcatgataagcaaaaaagttgttgaaatc |
510 |
Q |
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| T |
54141854 |
aggataaactgcagcaataaccattgactaaattaacagctgataagcaca-------agaacatgtatgtgcatgataagcaaaaaagttgttgaaatc |
54141762 |
T |
|
| Q |
511 |
ttaaccactggtttttcataacgaatataagtcaacaatttatcttttgaagtagttagatcattgaagaagtgtaagttatcacaagaataaaagacgg |
610 |
Q |
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| T |
54141761 |
ttaaccactggtttttcataatgaatataagtcaacaatttatcttttgaagtggttagatcattgaagaagtgtaagttatcacaagaataaaagacgg |
54141662 |
T |
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| Q |
611 |
tgcggaaaatcataccag |
628 |
Q |
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| T |
54141661 |
tgcggaaaatcataccag |
54141644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 200 - 338
Target Start/End: Complemental strand, 54129041 - 54128903
Alignment:
| Q |
200 |
tagcctaggatccacttctcagcttcagattataaacaatttaatcaaactttcaagtgtagactttcattatcaactataactcggttttaccaggctc |
299 |
Q |
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| T |
54129041 |
tagcctaggatccacttctcagcttcagattataaacaaattaatcatattttcaagtgcaaacttgcattatcaactataactcggttttaccgagctc |
54128942 |
T |
|
| Q |
300 |
ctattatgtgatagttaattatgttacagtagtattata |
338 |
Q |
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| T |
54128941 |
ctattatgtgatggttaattatgcttcagtagtgttata |
54128903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 387 - 628
Target Start/End: Complemental strand, 54128903 - 54128662
Alignment:
| Q |
387 |
aaacaaagaattgatgcactatggaggataaactgcagcaataaccattgactaaattaa---cagctgataagcacaagaaacaagaacgtgtatgtgc |
483 |
Q |
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| T |
54128903 |
aaacaaaggattgatacactttagaggataaagtgcagcaataaccattgattaaaaaaatatcagttgataagct-aatatacaagaac----atgtgt |
54128809 |
T |
|
| Q |
484 |
atgataagcaaaaaagttgttgaaatcttaaccactggtttt-tcat-aacgaatat-aagtcaacaatttatcttttgaagtagttagatcattgaaga |
580 |
Q |
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| T |
54128808 |
atgataaactaaaaagttgttgaaatctcaaccattggttttctgatcaatgattattaagtccacactttatcttttgaagtaatcagatcattaaaca |
54128709 |
T |
|
| Q |
581 |
agtgtaagttatcacaagaataaaagacggtgcggaaaatcataccag |
628 |
Q |
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| T |
54128708 |
tgtgtaagttatcacaggaataaaa-atggtgcggaaaatcataccag |
54128662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 54129137 - 54129101
Alignment:
| Q |
106 |
cataattaaccagtaatctcccacagaaagattccag |
142 |
Q |
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| T |
54129137 |
cataattaaccagtaatctcccacaaaaagattccag |
54129101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 54129262 - 54129221
Alignment:
| Q |
19 |
tgtcttcagtggtcaactattaaccagctgaacaaaatatgt |
60 |
Q |
| |
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||||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
54129262 |
tgtcttcagtgctcagctattaaacagctgaacaaaatatgt |
54129221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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