View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21203_low_14 (Length: 250)
Name: NF21203_low_14
Description: NF21203
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21203_low_14 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 32977750 - 32977507
Alignment:
| Q |
7 |
gtgagatgaaaaactggctcagttaaactgggacagaggaagtgtgttgtaccaaacacatgcttattaaaatttattaaaaatagtaaagcccatcttt |
106 |
Q |
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| T |
32977750 |
gtgaaatgaaaaaatggctcagttaaactgagacagagggagtatgttgtaccaaacacatgcttattaaaatttattaaaaatagtaaagcccatcttt |
32977651 |
T |
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| Q |
107 |
aaatcaagttcatattagatgcctcaatattatgatttaatttaggtaaggtacatgctttcacgaactatggatagtttataaattaaccactcaaaat |
206 |
Q |
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| T |
32977650 |
aaatcaagttcatattagatgcctcaatattatgatttaatttaggtaaggtacaggctttcaagaactatggatagtttgtaaatcaaccaatcaaaat |
32977551 |
T |
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| Q |
207 |
ttgtcaaataagtaaatttacaagtggtattcataaactaactt |
250 |
Q |
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| T |
32977550 |
ttgtcaaataagtaaatttacaagtggtattcgtaaactaactt |
32977507 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 42360593 - 42360548
Alignment:
| Q |
205 |
atttgtcaaataagtaaatttacaagtggtattcataaactaactt |
250 |
Q |
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| T |
42360593 |
atttgtcaaataaataaatatacaagtggtatccacaaactaactt |
42360548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 7308219 - 7308182
Alignment:
| Q |
72 |
attaaaatttattaaaaatagtaaagcccatctttaaa |
109 |
Q |
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| T |
7308219 |
attaaaatttattaaaaatagtaaaatccatctttaaa |
7308182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 17863455 - 17863488
Alignment:
| Q |
217 |
agtaaatttacaagtggtattcataaactaactt |
250 |
Q |
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| T |
17863455 |
agtaaatttacaagtggtatccataaactaactt |
17863488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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